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EEPD1
BASAL GANGLIA - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:12.5 nTPM
HPA:12.5 nTPM
GTEx:9.7 nTPM
FANTOM5:20.9 Scaled Tags Per Million
Pig:2.2 nTPM
Mouse:16.1 nTPM
Allen mouse:2.0 Expression energy

BASAL GANGLIA - Annotated protein expression
Pending normal tissue analysis

BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 12.5
Sample id Sample description nTPM
Caudate nucleus
nTPM: 9.6
2288 Male, age 75, left hemisphere 10.1
2290 Female, age 72, unknown 10.1
2846 Female, age 79, unknown 10.0
1781 Male, age 74, unknown 9.7
2481 Female, age 94, left hemisphere 9.5
1854 Male, age 80, left hemisphere 9.2
2289 Male, age 61, right hemisphere 9.2
1857 Female, age 85, left hemisphere 9.1
Claustrum
nTPM: 10.6
2292 Female, age 85, both hemispheres 14.3
2198 Male, age 80, both hemispheres 10.8
2284 Female, age 91, both hemispheres 10.7
2392 Female, age 94, both hemispheres 10.3
1956 Male, age 74, unknown 10.2
2196 Female, age 79, unknown 10.0
2491 Male, age 75, both hemispheres 10.0
2568 Male, age 61, both hemispheres 9.8
2645 Female, age 72, unknown 9.6
Globus pallidus, externus
nTPM: 12.5
2395 Male, age 75, both hemispheres 14.0
2567 Female, age 72, unknown 12.7
2646 Male, age 61, right hemisphere 12.2
1996 Male, age 80, right hemisphere 12.0
2772 Female, age 79, unknown 11.5
Globus pallidus, internus
nTPM: 12.4
2111 Female, age 85, right hemisphere 14.5
2566 Female, age 72, unknown 13.4
2778 Female, age 91, both hemispheres 13.3
2287 Male, age 75, right hemisphere 12.8
2037 Male, age 80, right hemisphere 11.8
1818 Male, age 74, unknown 10.8
2483 Female, age 94, right hemisphere 10.4
Nucleus accumbens
nTPM: 9.9
2391 Female, age 94, left hemisphere 11.3
2732 Male, age 80, right hemisphere 11.0
2698 Female, age 72, unknown 10.5
2286 Male, age 75, left hemisphere 10.4
1806 Female, age 85, left hemisphere 9.6
2824 Male, age 61, right hemisphere 9.1
1783 Male, age 74, unknown 8.7
1856 Female, age 91, right hemisphere 8.7
Nucleus basalis of Meynert
nTPM: 10.8
2569 Male, age 61, both hemispheres 11.0
2484 Female, age 94, left hemisphere 10.9
2821 Male, age 75, both hemispheres 10.9
2393 Male, age 80, right hemisphere 10.5
Nucleus of the diagonal band
nTPM: 8.5
1979 Male, age 74, unknown 8.8
2029 Male, age 61, right hemisphere 8.6
2775 Male, age 80, right hemisphere 8.5
1812 Female, age 91, both hemispheres 8.3
2195 Female, age 85, both hemispheres 8.3
Olfactory tubercle
nTPM: 9.0
2487 Female, age 94, left hemisphere 9.6
1998 Female, age 91, both hemispheres 9.3
1846 Male, age 80, right hemisphere 8.5
2856 Male, age 75, right hemisphere 8.5
Putamen
nTPM: 10.5
2489 Female, age 72, unknown 12.0
2466 Female, age 79, unknown 11.3
1829 Male, age 74, unknown 11.0
2647 Male, age 75, left hemisphere 10.1
2482 Female, age 94, left hemisphere 10.0
1937 Female, age 91, right hemisphere 9.9
1838 Male, age 80, right hemisphere 9.3
Septal nuclei
nTPM: 8.7
2394 Male, age 61, left hemisphere 9.5
2199 Male, age 80, right hemisphere 9.4
2059 Female, age 85, both hemispheres 8.9
2031 Female, age 72, unknown 8.5
1960 Male, age 74, unknown 8.3
2629 Female, age 94, right hemisphere 8.2
2009 Female, age 91, both hemispheres 8.0

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 9.7
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 7.3
Samples: 246

Max nTPM: 17.4
Min nTPM: 2.7
Std nTPM: 2.4
Median nTPM: 7.1
GTEX-1HCU6-0011-R5a-SM-ARU76 60-69 years, female 17.4
GTEX-1HBPH-0011-R5b-SM-A9G1R 40-49 years, female 16.6
GTEX-1GN2E-0011-R5b-SM-CJI2M 60-69 years, male 15.1
GTEX-1J8JJ-0011-R5a-SM-D4P2G 60-69 years, female 14.5
GTEX-1HCVE-0011-R5b-SM-CKZP7 50-59 years, male 13.6
GTEX-17HHY-0011-R5b-SM-79OMZ 50-59 years, male 13.2
GTEX-11O72-0011-R5a-SM-DO922 40-49 years, male 13.0
GTEX-1IL2U-0011-R5a-SM-CE6SN 60-69 years, male 12.7
GTEX-11DXW-0011-R5b-SM-DO11D 40-49 years, male 12.5
GTEX-1RNSC-0011-R5a-SM-EZ6N5 60-69 years, male 12.5
GTEX-1B996-0011-R5a-SM-7P8PN 60-69 years, male 12.1
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 6.8
Samples: 246

Max nTPM: 17.8
Min nTPM: 2.0
Std nTPM: 2.4
Median nTPM: 6.6
GTEX-1HFI6-0011-R6b-SM-CM2SR 40-49 years, male 17.8
GTEX-1LB8K-0011-R6a-SM-EXURT 50-59 years, male 14.4
GTEX-13N1W-0011-R6a-SM-5MR43 70-79 years, male 14.1
GTEX-1LC47-0011-R6b-SM-EZ6MI 60-69 years, male 13.7
GTEX-11DXW-0011-R6a-SM-DO11N 40-49 years, male 13.2
GTEX-1I1HK-0011-R6b-SM-CM2T9 60-69 years, male 13.0
GTEX-1RLM8-0011-R6a-SM-EYYXS 50-59 years, male 12.9
GTEX-1H3O1-0011-R6b-SM-CL54U 60-69 years, male 12.7
GTEX-YFC4-0011-R6b-SM-4V6E1 40-49 years, female 11.6
GTEX-16Z82-0011-R6a-SM-7IGLV 60-69 years, male 11.3
GTEX-11DYG-0011-R6a-SM-DO936 60-69 years, male 11.3
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Brain - Putamen (basal ganglia)
Average nTPM: 9.7
Samples: 205

Max nTPM: 21.8
Min nTPM: 3.7
Std nTPM: 3.0
Median nTPM: 9.2
GTEX-1HCU6-0011-R7b-SM-ARL77 60-69 years, female 21.8
GTEX-1I1CD-0011-R7a-SM-CMKHA 60-69 years, female 19.9
GTEX-18464-0011-R7b-SM-731CM 50-59 years, male 19.2
GTEX-13N2G-0011-R7a-SM-5MR42 60-69 years, male 18.6
GTEX-1LSNL-0011-R7a-SM-EYYWI 50-59 years, male 18.1
GTEX-17HHY-0011-R7a-SM-718A1 50-59 years, male 17.8
GTEX-1GN2E-0011-R7b-SM-9QEIJ 60-69 years, male 17.8
GTEX-1MA7X-0011-R7b-SM-EYYWS 60-69 years, male 16.3
GTEX-13CF2-0011-R7b-SM-5K7UV 60-69 years, male 15.7
GTEX-ZVZQ-0011-R7b-SM-57WBB 60-69 years, female 15.4
GTEX-15G19-0011-R7b-SM-6M479 60-69 years, male 15.1
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 20.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 6.8
FF:10164-103B2 76 years, female 6.8
Globus pallidus
Scaled Tags Per Million: 20.9
FF:10175-103C4 60 years, female 23.6
FF:10161-103A8 76 years, female 18.2
Nucleus accumbens
Scaled Tags Per Million: 10.0
FF:10037-101F1 23-56 years, mixed 10.0
Putamen
Scaled Tags Per Million: 6.9
FF:10176-103C5 60 years, female 6.9

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 2.2
Pig sample Sample description nTPM
Caudate
nTPM: 2.2
Samples: 4

Max nTPM: 2.4
Min nTPM: 2.0
Sample A Female 2.0
Sample B Female 2.4
Sample C Male 2.2
Sample D Male 2.0
Putamen
nTPM: 1.8
Samples: 4

Max nTPM: 2.0
Min nTPM: 1.5
Sample A Female 1.5
Sample B Female 2.0
Sample C Male 1.9
Sample D Male 1.8
Septum
nTPM: 1.3
Samples: 4

Max nTPM: 1.6
Min nTPM: 0.9
Sample A Female 1.4
Sample B Female 1.6
Sample C Male 0.9
Sample D Male 1.2
Ventral pallidum
nTPM: 1.8
Samples: 4

Max nTPM: 2.9
Min nTPM: 1.3
Sample A Female 1.6
Sample B Female 2.9
Sample C Male 1.3
Sample D Male 1.5

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 16.1
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 16.1
Samples: 4

Max nTPM: 18.4
Min nTPM: 14.3
Sample A Male 16.7
Sample B Male 18.4
Sample C Female 14.3
Sample D Female 15.0
Septum
nTPM: 6.3
Samples: 4

Max nTPM: 6.9
Min nTPM: 6.0
Sample A Male 6.9
Sample B Male 6.2
Sample C Female 6.2
Sample D Female 6.0
Ventral forebrain
nTPM: 11.8
Samples: 4

Max nTPM: 13.1
Min nTPM: 9.7
Sample A Male 12.3
Sample B Male 12.1
Sample C Female 9.7
Sample D Female 13.1

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 2.0
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 2.0
70805895 Antisense, RP_050725_02_E01, Mouse strain C57BL/6J (56 days, male) 3.1
68162197 Antisense, RP_041122_01_F07, Mouse strain C57BL/6J (56 days, male) 1.0
Pallidum
Expression energy: 0.8
70805895 Antisense, RP_050725_02_E01, Mouse strain C57BL/6J (56 days, male) 1.1
68162197 Antisense, RP_041122_01_F07, Mouse strain C57BL/6J (56 days, male) 0.5

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.