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EEPD1
MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:12.8 nTPM
HPA:12.8 nTPM
GTEx:13.0 nTPM
FANTOM5:26.2 Scaled Tags Per Million
Pig:1.3 nTPM
Mouse:4.4 nTPM
Allen mouse:1.0 Expression energy

MIDBRAIN - Annotated protein expression
Pending normal tissue analysis

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 12.8
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 11.4
2586 Male, age 75, left hemisphere 12.3
2411 Female, age 72, unknown 12.1
1830 Male, age 51, unknown 11.8
2828 Female, age 72, unknown 11.8
1870 Female, age 42, unknown 11.7
1833 Male, age 53, unknown 11.6
2666 Male, age 74, left hemisphere 10.9
1827 Male, age 72, unknown 10.8
2019 Male, age 18, unknown 10.7
2219 Male, age 76, both hemispheres 10.1
Dorsal raphe nucleus
nTPM: 10.1
2750 Male, age 76, both hemispheres 12.0
2047 Male, age 72, unknown 10.1
1828 Male, age 53, unknown 9.8
2016 Female, age 72, unknown 9.2
2298 Female, age 72, unknown 9.2
Inferior colliculus
nTPM: 10.7
1848 Female, age 42, unknown 11.5
2849 Male, age 72, unknown 10.5
1890 Male, age 53, unknown 10.4
2097 Female, age 72, unknown 10.3
Median raphe nucleus
nTPM: 10.3
2220 Male, age 76, midline 10.3
Pedunculopontine tegmental nucleus
nTPM: 10.8
2338 Male, age 61, both hemispheres 11.9
2334 Male, age 80, both hemispheres 10.5
1921 Female, age 85, both hemispheres 10.0
Periaquaductal grey, anterior
nTPM: 11.3
1947 Male, age 18, unknown 12.6
2502 Female, age 75, unknown 11.2
1795 Male, age 51, unknown 10.1
Periaquaductal grey, dorsal
nTPM: 9.6
2464 Female, age 72, unknown 10.7
1840 Male, age 53, unknown 9.6
1831 Male, age 72, unknown 9.4
2850 Male, age 76, both hemispheres 8.9
Periaquaductal grey, lateral
nTPM: 9.6
2053 Male, age 18, unknown 10.0
2272 Male, age 74, both hemispheres 9.5
2140 Male, age 76, both hemispheres 9.3
Pretectal area
nTPM: 10.0
2316 Male, age 76, right hemisphere 10.6
2825 Male, age 18, unknown 10.6
1815 Male, age 53, unknown 10.5
2007 Male, age 72, unknown 10.5
1817 Female, age 42, unknown 10.3
2407 Male, age 75, both hemispheres 10.2
1816 Male, age 51, unknown 10.1
2667 Female, age 75, unknown 9.8
2224 Female, age 72, unknown 9.4
2273 Male, age 74, both hemispheres 9.0
1944 Female, age 72, unknown 8.8
Red nucleus
nTPM: 12.8
2823 Male, age 76, right hemisphere 14.1
1904 Male, age 53, unknown 13.7
1954 Female, age 42, unknown 13.6
2227 Male, age 72, unknown 13.5
2503 Female, age 72, unknown 13.3
2769 Male, age 72, unknown 13.1
2588 Male, age 74, left hemisphere 12.8
1865 Male, age 51, unknown 12.5
2725 Female, age 75, unknown 12.2
2584 Male, age 75, left hemisphere 11.9
1821 Female, age 72, unknown 11.7
2785 Male, age 18, unknown 10.9
Substantia nigra
nTPM: 10.8
2583 Male, age 75, right hemisphere 13.2
2590 Female, age 75, unknown 12.9
2409 Female, age 72, unknown 12.0
1851 Male, age 51, unknown 10.7
2699 Male, age 18, unknown 10.4
2665 Male, age 74, both hemispheres 10.2
1889 Female, age 72, unknown 10.1
1941 Male, age 53, unknown 10.0
2241 Male, age 72, unknown 9.6
1916 Female, age 42, unknown 9.3
Superior colliculus
nTPM: 10.7
1913 Female, age 42, unknown 11.6
1995 Male, age 72, unknown 11.3
1796 Male, age 53, unknown 11.1
1839 Male, age 51, unknown 11.1
2261 Male, age 18, unknown 10.8
2087 Female, age 72, unknown 10.7
1895 Male, age 76, right hemisphere 10.6
2587 Male, age 74, left hemisphere 10.5
2664 Male, age 75, both hemispheres 9.7
2668 Female, age 75, unknown 9.5
Ventral tegmental area
nTPM: 10.5
2223 Female, age 72, unknown 11.3
2410 Female, age 72, unknown 11.3
1942 Male, age 51, unknown 10.8
2021 Male, age 53, unknown 10.0
1915 Female, age 42, unknown 9.9
2218 Male, age 76, both hemispheres 9.9

MIDBRAIN - GTEx RNA-seqi
Average nTPM 13.0
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 13.0
Samples: 139

Max nTPM: 62.2
Min nTPM: 4.2
Std nTPM: 7.5
Median nTPM: 11.7
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 62.2
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 54.9
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 32.5
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 31.3
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 31.0
GTEX-139TS-0011-R2b-SM-5J1MX 60-69 years, male 25.3
GTEX-1J8Q2-0011-R2b-SM-EAZ2X 60-69 years, male 23.0
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 22.8
GTEX-ZAB4-0011-R2a-SM-4RGNP 40-49 years, male 21.0
GTEX-1H1DG-0011-R2a-SM-ADEIQ 70-79 years, male 21.0
GTEX-1F6IF-0011-R2b-SM-9QEHB 60-69 years, male 20.9
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 26.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 26.2
FF:10158-103A5 76 years, female 26.2

MIDBRAIN - Pig RNA-seqi
Average nTPM 1.3
Pig sample Sample description nTPM
Midbrain
nTPM: 1.4
Samples: 4

Max nTPM: 1.7
Min nTPM: 0.9
Sample A Female 1.3
Sample B Female 0.9
Sample C Male 1.7
Sample D Male 1.5
Periaqueductal gray
nTPM: 0.9
Samples: 3

Max nTPM: 1.0
Min nTPM: 0.7
Sample B Female 1.0
Sample C Male 0.7
Sample D Male 1.0
Substantia nigra
nTPM: 1.0
Samples: 4

Max nTPM: 1.4
Min nTPM: 0.7
Sample A Female 0.7
Sample B Female 1.2
Sample C Male 0.8
Sample D Male 1.4
Superior colliculi
nTPM: 1.2
Samples: 4

Max nTPM: 1.4
Min nTPM: 1.1
Sample A Female 1.1
Sample B Female 1.2
Sample C Male 1.4
Sample D Male 1.1

MIDBRAIN - Mouse RNA-seqi
Average nTPM 4.4
Mouse sample Sample description nTPM
Midbrain
nTPM: 4.4
Samples: 4

Max nTPM: 5.2
Min nTPM: 3.8
Sample A Male 4.7
Sample B Male 4.0
Sample C Female 5.2
Sample D Female 3.8

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 1.0
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 1.0
70805895 Antisense, RP_050725_02_E01, Mouse strain C57BL/6J (56 days, male) 1.4
68162197 Antisense, RP_041122_01_F07, Mouse strain C57BL/6J (56 days, male) 0.6

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.