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MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:138.5 nTPM
HPA:138.5 nTPM
GTEx:206.5 nTPM
FANTOM5:237.1 Scaled Tags Per Million
Pig:104.7 nTPM
Mouse:220.2 nTPM
Allen mouse:9.8 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 138.5
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 130.5
2019 Male, age 18, unknown 136.7
1827 Male, age 72, unknown 135.9
2411 Female, age 72, unknown 134.7
1870 Female, age 42, unknown 131.5
2828 Female, age 72, unknown 130.5
2219 Male, age 76, both hemispheres 129.9
1833 Male, age 53, unknown 129.4
1830 Male, age 51, unknown 128.2
2666 Male, age 74, left hemisphere 125.3
2586 Male, age 75, left hemisphere 122.8
Dorsal raphe nucleus
nTPM: 130.1
2298 Female, age 72, unknown 139.0
2750 Male, age 76, both hemispheres 137.5
2047 Male, age 72, unknown 127.3
1828 Male, age 53, unknown 127.0
2016 Female, age 72, unknown 119.9
Inferior colliculus
nTPM: 127.9
2097 Female, age 72, unknown 131.1
1890 Male, age 53, unknown 127.6
1848 Female, age 42, unknown 127.3
2849 Male, age 72, unknown 125.6
Median raphe nucleus
nTPM: 138.5
2220 Male, age 76, midline 138.5
Pedunculopontine tegmental nucleus
nTPM: 137.5
2334 Male, age 80, both hemispheres 140.3
2338 Male, age 61, both hemispheres 138.1
1921 Female, age 85, both hemispheres 134.0
Periaquaductal grey, anterior
nTPM: 130.5
1947 Male, age 18, unknown 132.6
2502 Female, age 75, unknown 130.1
1795 Male, age 51, unknown 128.6
Periaquaductal grey, dorsal
nTPM: 120.1
1831 Male, age 72, unknown 122.0
1840 Male, age 53, unknown 120.9
2850 Male, age 76, both hemispheres 119.4
2464 Female, age 72, unknown 118.1
Periaquaductal grey, lateral
nTPM: 122.5
2272 Male, age 74, both hemispheres 131.3
2053 Male, age 18, unknown 119.1
2140 Male, age 76, both hemispheres 117.1
Pretectal area
nTPM: 130.9
1944 Female, age 72, unknown 141.3
2007 Male, age 72, unknown 141.3
1817 Female, age 42, unknown 140.2
1816 Male, age 51, unknown 138.4
1815 Male, age 53, unknown 134.0
2273 Male, age 74, both hemispheres 126.2
2224 Female, age 72, unknown 125.7
2407 Male, age 75, both hemispheres 124.5
2667 Female, age 75, unknown 124.5
2825 Male, age 18, unknown 123.1
2316 Male, age 76, right hemisphere 120.8
Red nucleus
nTPM: 134.3
2785 Male, age 18, unknown 140.6
1821 Female, age 72, unknown 140.0
2503 Female, age 72, unknown 138.5
1865 Male, age 51, unknown 135.4
2725 Female, age 75, unknown 134.8
1954 Female, age 42, unknown 133.7
1904 Male, age 53, unknown 133.2
2823 Male, age 76, right hemisphere 133.2
2227 Male, age 72, unknown 131.8
2769 Male, age 72, unknown 130.5
2588 Male, age 74, left hemisphere 130.4
2584 Male, age 75, left hemisphere 130.0
Substantia nigra
nTPM: 135.0
1916 Female, age 42, unknown 154.5
1941 Male, age 53, unknown 142.0
1889 Female, age 72, unknown 139.3
1851 Male, age 51, unknown 138.5
2590 Female, age 75, unknown 137.7
2241 Male, age 72, unknown 133.8
2699 Male, age 18, unknown 129.0
2583 Male, age 75, right hemisphere 127.6
2665 Male, age 74, both hemispheres 126.8
2409 Female, age 72, unknown 120.5
Superior colliculus
nTPM: 128.4
2087 Female, age 72, unknown 135.9
2587 Male, age 74, left hemisphere 133.0
1796 Male, age 53, unknown 132.0
2668 Female, age 75, unknown 130.9
2261 Male, age 18, unknown 130.8
1895 Male, age 76, right hemisphere 128.4
1913 Female, age 42, unknown 127.2
1839 Male, age 51, unknown 126.2
1995 Male, age 72, unknown 122.5
2664 Male, age 75, both hemispheres 116.9
Ventral tegmental area
nTPM: 132.5
2218 Male, age 76, both hemispheres 140.0
2410 Female, age 72, unknown 138.1
1915 Female, age 42, unknown 136.9
2223 Female, age 72, unknown 131.7
1942 Male, age 51, unknown 126.0
2021 Male, age 53, unknown 122.5

MIDBRAIN - GTEx RNA-seqi
Average nTPM 206.5
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 206.5
Samples: 139

Max nTPM: 355.4
Min nTPM: 120.6
Std nTPM: 45.0
Median nTPM: 201.9
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 355.4
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 329.7
GTEX-1IY9M-0011-R2a-SM-D4P29 60-69 years, male 325.0
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 321.5
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 306.6
GTEX-11DZ1-0011-R2a-SM-DNZZM 50-59 years, male 304.1
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 291.8
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 290.0
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 287.1
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 286.9
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 283.1
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 237.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 237.1
FF:10158-103A5 76 years, female 237.1

MIDBRAIN - Pig RNA-seqi
Average nTPM 104.7
Pig sample Sample description nTPM
Midbrain
nTPM: 88.6
Samples: 4

Max nTPM: 105.7
Min nTPM: 69.6
Sample A Female 87.6
Sample B Female 69.6
Sample C Male 105.7
Sample D Male 91.3
Periaqueductal gray
nTPM: 66.2
Samples: 3

Max nTPM: 76.4
Min nTPM: 59.9
Sample B Female 62.4
Sample C Male 76.4
Sample D Male 59.9
Substantia nigra
nTPM: 73.2
Samples: 4

Max nTPM: 96.3
Min nTPM: 56.4
Sample A Female 96.3
Sample B Female 58.3
Sample C Male 81.7
Sample D Male 56.4
Superior colliculi
nTPM: 104.7
Samples: 4

Max nTPM: 118.3
Min nTPM: 90.0
Sample A Female 107.9
Sample B Female 102.5
Sample C Male 118.3
Sample D Male 90.0

MIDBRAIN - Mouse RNA-seqi
Average nTPM 220.2
Mouse sample Sample description nTPM
Midbrain
nTPM: 220.3
Samples: 4

Max nTPM: 231.0
Min nTPM: 214.3
Sample A Male 231.0
Sample B Male 219.1
Sample C Female 214.3
Sample D Female 216.7

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 9.8
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 9.8
69838610 Antisense, RP_050310_02_C09, Mouse strain C57BL/6J (56 days, male) 9.9
74819690 Antisense, RP_060315_02_H06, Mouse strain C57BL/6J (56 days, male) 9.8

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.