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BASAL GANGLIA - Expression summary
Protein expression
Caudatei
h
m
l
n
Glial cells: High
Neuronal cells: High
RNA expressioni
Consensus:53.5 nTPM
HPA:53.5 nTPM
GTEx:49.9 nTPM
FANTOM5:118.6 Scaled Tags Per Million
Pig:39.0 nTPM
Mouse:10.0 nTPM
Allen mouse:0.5 Expression energy

CAUDATE - Antibody stainingi
Antibody HPA003279Antibody HPA003360Antibody CAB019303
Glial cells Not detectedLowHigh
Neuronal cells Medium-High





BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 53.5
Sample id Sample description nTPM
Caudate nucleus
nTPM: 40.5
2288 Male, age 75, left hemisphere 44.4
2481 Female, age 94, left hemisphere 43.8
1781 Male, age 74, unknown 42.5
2846 Female, age 79, unknown 40.3
1854 Male, age 80, left hemisphere 40.1
1857 Female, age 85, left hemisphere 39.9
2290 Female, age 72, unknown 38.0
2289 Male, age 61, right hemisphere 35.2
Claustrum
nTPM: 53.5
2198 Male, age 80, both hemispheres 64.5
2568 Male, age 61, both hemispheres 57.0
1956 Male, age 74, unknown 55.6
2284 Female, age 91, both hemispheres 55.5
2645 Female, age 72, unknown 54.0
2491 Male, age 75, both hemispheres 52.2
2292 Female, age 85, both hemispheres 49.1
2392 Female, age 94, both hemispheres 47.5
2196 Female, age 79, unknown 46.1
Globus pallidus, externus
nTPM: 38.8
2646 Male, age 61, right hemisphere 40.5
2395 Male, age 75, both hemispheres 40.4
2772 Female, age 79, unknown 39.7
2567 Female, age 72, unknown 38.4
1996 Male, age 80, right hemisphere 35.0
Globus pallidus, internus
nTPM: 41.3
2483 Female, age 94, right hemisphere 48.7
2287 Male, age 75, right hemisphere 46.3
1818 Male, age 74, unknown 41.6
2778 Female, age 91, both hemispheres 40.1
2111 Female, age 85, right hemisphere 39.7
2566 Female, age 72, unknown 37.2
2037 Male, age 80, right hemisphere 35.8
Nucleus accumbens
nTPM: 38.2
2391 Female, age 94, left hemisphere 42.7
2286 Male, age 75, left hemisphere 42.5
1856 Female, age 91, right hemisphere 40.2
1806 Female, age 85, left hemisphere 38.4
1783 Male, age 74, unknown 37.6
2824 Male, age 61, right hemisphere 37.1
2698 Female, age 72, unknown 36.5
2732 Male, age 80, right hemisphere 30.8
Nucleus basalis of Meynert
nTPM: 42.5
2393 Male, age 80, right hemisphere 44.0
2821 Male, age 75, both hemispheres 43.3
2569 Male, age 61, both hemispheres 42.1
2484 Female, age 94, left hemisphere 40.8
Nucleus of the diagonal band
nTPM: 47.2
2775 Male, age 80, right hemisphere 56.1
1812 Female, age 91, both hemispheres 51.0
2029 Male, age 61, right hemisphere 50.7
2195 Female, age 85, both hemispheres 44.8
1979 Male, age 74, unknown 33.4
Olfactory tubercle
nTPM: 49.5
1846 Male, age 80, right hemisphere 57.1
1998 Female, age 91, both hemispheres 53.7
2856 Male, age 75, right hemisphere 47.2
2487 Female, age 94, left hemisphere 40.1
Putamen
nTPM: 44.1
2647 Male, age 75, left hemisphere 50.1
2482 Female, age 94, left hemisphere 46.8
1838 Male, age 80, right hemisphere 43.4
2489 Female, age 72, unknown 43.3
1829 Male, age 74, unknown 42.8
1937 Female, age 91, right hemisphere 41.3
2466 Female, age 79, unknown 41.1
Septal nuclei
nTPM: 41.2
2031 Female, age 72, unknown 48.4
1960 Male, age 74, unknown 46.4
2009 Female, age 91, both hemispheres 45.9
2629 Female, age 94, right hemisphere 43.6
2199 Male, age 80, right hemisphere 35.3
2394 Male, age 61, left hemisphere 34.6
2059 Female, age 85, both hemispheres 34.5

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 49.9
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 46.8
Samples: 246

Max nTPM: 86.3
Min nTPM: 29.4
Std nTPM: 7.5
Median nTPM: 46.7
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 86.3
GTEX-RNOR-0011-R5A-SM-2TF4J 50-59 years, female 78.3
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 69.4
GTEX-QVJO-0011-R5A-SM-2S1QM 60-69 years, female 67.0
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 63.9
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 63.6
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 62.4
GTEX-1E1VI-0011-R5b-SM-9WG5V 50-59 years, male 62.1
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 61.7
GTEX-145MH-0011-R5a-SM-5P9JT 50-59 years, male 61.4
GTEX-13X6J-0011-R5b-SM-5PNWT 50-59 years, male 59.5
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 38.0
Samples: 246

Max nTPM: 71.1
Min nTPM: 19.0
Std nTPM: 8.0
Median nTPM: 37.2
GTEX-11DYG-0011-R6a-SM-DO936 60-69 years, male 71.1
GTEX-12WSD-0011-R6b-SM-5P9JU 60-69 years, female 64.6
GTEX-11DXW-0011-R6a-SM-DO11N 40-49 years, male 63.2
GTEX-11TTK-0011-R6b-SM-DNZZW 60-69 years, female 59.8
GTEX-1HFI6-0011-R6b-SM-CM2SR 40-49 years, male 58.7
GTEX-QVJO-0011-R6A-SM-2S1QN 60-69 years, female 56.4
GTEX-1IGQW-0011-R6a-SM-CM2TC 60-69 years, male 54.7
GTEX-ZUA1-0011-R6b-SM-4YCDD 40-49 years, male 54.4
GTEX-16Z82-0011-R6a-SM-7IGLV 60-69 years, male 54.1
GTEX-131XW-0011-R6b-SM-5K7XY 50-59 years, female 53.5
GTEX-YJ89-0011-R6a-SM-4V6GN 60-69 years, male 53.3
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Brain - Putamen (basal ganglia)
Average nTPM: 49.9
Samples: 205

Max nTPM: 81.4
Min nTPM: 33.0
Std nTPM: 8.4
Median nTPM: 49.1
GTEX-Z93S-0011-R7b-SM-4RGNK 50-59 years, male 81.4
GTEX-1LVA9-0011-R7a-SM-EYYWG 50-59 years, male 80.6
GTEX-12WSA-0011-R7b-SM-5GU5U 60-69 years, male 77.5
GTEX-1F6I4-0011-R7a-SM-CJI24 60-69 years, male 75.2
GTEX-ZVZQ-0011-R7b-SM-57WBB 60-69 years, female 73.9
GTEX-144GO-0011-R7b-SM-5S2TT 60-69 years, male 73.1
GTEX-1MA7X-0011-R7b-SM-EYYWS 60-69 years, male 68.1
GTEX-15G19-0011-R7b-SM-6M479 60-69 years, male 67.4
GTEX-13CF2-0011-R7b-SM-5K7UV 60-69 years, male 66.5
GTEX-1MJK2-0011-R7a-SM-EXUS4 50-59 years, male 65.8
GTEX-14E7W-0011-R7b-SM-5ZZV4 70-79 years, male 64.4
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 118.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 103.3
FF:10164-103B2 76 years, female 103.3
Globus pallidus
Scaled Tags Per Million: 75.3
FF:10161-103A8 76 years, female 89.9
FF:10175-103C4 60 years, female 60.7
Nucleus accumbens
Scaled Tags Per Million: 118.6
FF:10037-101F1 23-56 years, mixed 118.6
Putamen
Scaled Tags Per Million: 78.2
FF:10176-103C5 60 years, female 78.2

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 39.0
Pig sample Sample description nTPM
Caudate
nTPM: 30.1
Samples: 4

Max nTPM: 36.8
Min nTPM: 20.0
Sample A Female 20.0
Sample B Female 28.0
Sample C Male 36.8
Sample D Male 35.4
Putamen
nTPM: 39.0
Samples: 4

Max nTPM: 54.3
Min nTPM: 31.4
Sample A Female 33.7
Sample B Female 31.4
Sample C Male 54.3
Sample D Male 36.5
Septum
nTPM: 30.3
Samples: 4

Max nTPM: 40.7
Min nTPM: 23.3
Sample A Female 28.8
Sample B Female 28.3
Sample C Male 40.7
Sample D Male 23.3
Ventral pallidum
nTPM: 32.3
Samples: 4

Max nTPM: 39.1
Min nTPM: 28.3
Sample A Female 30.6
Sample B Female 28.3
Sample C Male 39.1
Sample D Male 31.2

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 10.0
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 5.7
Samples: 4

Max nTPM: 6.5
Min nTPM: 4.7
Sample A Male 5.6
Sample B Male 4.7
Sample C Female 6.5
Sample D Female 5.9
Septum
nTPM: 10.0
Samples: 4

Max nTPM: 12.2
Min nTPM: 7.8
Sample A Male 12.2
Sample B Male 8.5
Sample C Female 7.8
Sample D Female 11.6
Ventral forebrain
nTPM: 8.5
Samples: 4

Max nTPM: 10.4
Min nTPM: 6.3
Sample A Male 9.6
Sample B Male 10.4
Sample C Female 6.3
Sample D Female 7.5

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 0.5
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 0.1
2452 Antisense, RP_Baylor_103278, Mouse strain C57BL/6J (56 days, male) 0.1
2453 Antisense, RP_Baylor_103278, Mouse strain C57BL/6J (56 days, male) 0.1
Pallidum
Expression energy: 0.5
2453 Antisense, RP_Baylor_103278, Mouse strain C57BL/6J (56 days, male) 0.5
2452 Antisense, RP_Baylor_103278, Mouse strain C57BL/6J (56 days, male) 0.2

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The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.