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HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: Medium
Neuronal cells: High
RNA expressioni
Consensus:54.9 nTPM
HPA:54.9 nTPM
GTEx:49.5 nTPM
FANTOM5:93.0 Scaled Tags Per Million
Pig:27.2 nTPM
Mouse:12.5 nTPM
Allen mouse:0.6 Expression energy

HIPPOCAMPUS - Antibody stainingi
Antibody HPA003279Antibody HPA003360Antibody CAB019303
Glial cells Not detectedNot detectedMedium
Neuronal cells MediumMediumHigh







HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 54.9
Sample id Sample description nTPM
Hippocampus
nTPM: 42.1
1855 Male, age 76, left hemisphere 44.8
1898 Male, age 80, left hemisphere 44.6
2529 Female, age 94, left hemisphere 43.9
2621 Female, age 67, right hemisphere 42.5
2148 Female, age 91, left hemisphere 42.0
1911 Female, age 85, right hemisphere 34.7
Dentate gyrus
nTPM: 41.5
2010 Male, age 76, both hemispheres 44.2
2530 Female, age 94, left hemisphere 44.2
2531 Female, age 67, both hemispheres 43.6
1927 Female, age 91, both hemispheres 39.5
2246 Female, age 85, both hemispheres 39.4
2528 Male, age 74, both hemispheres 38.3
Entorhinal gyrus
nTPM: 41.8
2764 Male, age 80, right hemisphere 50.8
2686 Male, age 75, right hemisphere 44.9
1787 Male, age 76, left hemisphere 43.1
1938 Female, age 85, left hemisphere 38.8
2117 Female, age 91, right hemisphere 37.0
2613 Female, age 94, left hemisphere 36.4
Hippocampus, CA1
nTPM: 42.6
2045 Male, age 76, both hemispheres 48.2
2749 Male, age 80, left hemisphere 47.3
1873 Female, age 85, both hemispheres 39.3
2082 Female, age 91, right hemisphere 39.2
2527 Male, age 74, both hemispheres 38.7
Hippocampus, CA2
nTPM: 43.2
1940 Female, age 85, left hemisphere 49.1
1892 Male, age 76, both hemispheres 44.1
1963 Male, age 80, left hemisphere 44.1
2113 Female, age 91, right hemisphere 43.6
2437 Female, age 94, left hemisphere 40.2
2249 Male, age 74, both hemispheres 38.0
Hippocampus, CA3
nTPM: 40.4
2137 Male, age 80, left hemisphere 44.4
2620 Female, age 94, left hemisphere 44.2
2861 Female, age 67, both hemispheres 41.1
1867 Male, age 76, both hemispheres 40.7
1891 Female, age 85, both hemispheres 36.8
2436 Male, age 74, both hemispheres 35.2
Parahippocampal cortex
nTPM: 46.2
1850 Male, age 80, both hemispheres 61.6
2532 Female, age 72, left hemisphere 50.6
2245 Female, age 91, both hemispheres 48.7
2018 Male, age 76, both hemispheres 46.0
2622 Female, age 67, right hemisphere 45.7
1933 Female, age 85, both hemispheres 45.2
2693 Female, age 94, both hemispheres 43.5
1990 Female, age 91, right hemisphere 41.7
2250 Female, age 67, right hemisphere 40.2
2692 Male, age 74, both hemispheres 39.0
Perirhinal gyrus
nTPM: 54.9
1794 Male, age 80, right hemisphere 64.9
1841 Female, age 85, right hemisphere 56.0
2521 Female, age 94, right hemisphere 53.9
1847 Female, age 91, left hemisphere 50.9
2848 Male, age 76, right hemisphere 48.9
Subiculum
nTPM: 38.6
1977 Female, age 85, both hemispheres 41.3
1901 Male, age 80, both hemispheres 39.9
2438 Female, age 94, left hemisphere 38.3
2619 Male, age 74, both hemispheres 37.8
2729 Female, age 91, right hemisphere 37.6
2042 Male, age 76, both hemispheres 36.7

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 49.5
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 49.5
Samples: 197

Max nTPM: 94.4
Min nTPM: 30.0
Std nTPM: 10.7
Median nTPM: 46.9
GTEX-14LLW-0011-R1a-SM-5ZZVD 70-79 years, female 94.4
GTEX-145MH-0011-R1b-SM-5PNWY 50-59 years, male 94.2
GTEX-WWYW-0011-R1A-SM-3TW8G 50-59 years, female 81.0
GTEX-1HT8W-0011-R1b-SM-CJI3V 30-39 years, male 79.9
GTEX-1ICLZ-0011-R1b-SM-A9SM3 60-69 years, male 77.9
GTEX-RNOR-0011-R1A-SM-CNNP5 50-59 years, female 77.6
GTEX-X4EP-0011-R1A-SM-3P624 60-69 years, female 75.6
GTEX-1H4P4-0011-R1b-SM-CL54V 50-59 years, male 73.4
GTEX-WL46-0011-R1A-SM-3LK6M 50-59 years, male 73.0
GTEX-11ZTS-0011-R1a-SM-5BC71 60-69 years, female 70.6
GTEX-14ABY-0011-R1a-SM-6EU2W 50-59 years, male 67.2
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 93.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 93.0
FF:10153-102I9 76 years, female 100.3
FF:10169-103B7 60 years, female 85.8

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 27.2
Pig sample Sample description nTPM
Dorsal hippocampus
nTPM: 27.2
Samples: 4

Max nTPM: 32.2
Min nTPM: 19.5
Sample A Female 32.2
Sample B Female 26.2
Sample C Male 31.0
Sample D Male 19.5
Entorhinal cortex
nTPM: 23.9
Samples: 4

Max nTPM: 26.8
Min nTPM: 22.6
Sample A Female 23.4
Sample B Female 26.8
Sample C Male 22.9
Sample D Male 22.6
Subiculum
nTPM: 21.3
Samples: 4

Max nTPM: 26.4
Min nTPM: 19.1
Sample A Female 26.4
Sample B Female 19.6
Sample C Male 19.1
Sample D Male 20.2
Ventral hippocampus
nTPM: 23.1
Samples: 4

Max nTPM: 26.1
Min nTPM: 17.8
Sample A Female 25.7
Sample B Female 17.8
Sample C Male 22.6
Sample D Male 26.1

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 12.5
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 12.6
Samples: 4

Max nTPM: 13.4
Min nTPM: 11.8
Sample A Male 12.6
Sample B Male 13.4
Sample C Female 11.8
Sample D Female 12.4
Hippocampal formation
nTPM: 10.8
Samples: 4

Max nTPM: 11.6
Min nTPM: 9.9
Sample A Male 11.6
Sample B Male 10.8
Sample C Female 9.9
Sample D Female 11.0

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 0.6
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 0.6
2453 Antisense, RP_Baylor_103278, Mouse strain C57BL/6J (56 days, male) 0.6
2452 Antisense, RP_Baylor_103278, Mouse strain C57BL/6J (56 days, male) 0.4

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.