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MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:53.9 nTPM
HPA:53.9 nTPM
GTEx:68.3 nTPM
FANTOM5:94.2 Scaled Tags Per Million
Pig:47.0 nTPM
Mouse:22.3 nTPM
Allen mouse:1.5 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 53.9
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 41.1
2219 Male, age 76, both hemispheres 49.4
1870 Female, age 42, unknown 43.9
2666 Male, age 74, left hemisphere 43.5
2411 Female, age 72, unknown 43.0
1830 Male, age 51, unknown 40.2
1827 Male, age 72, unknown 40.0
2828 Female, age 72, unknown 39.9
1833 Male, age 53, unknown 39.3
2586 Male, age 75, left hemisphere 39.3
2019 Male, age 18, unknown 32.1
Dorsal raphe nucleus
nTPM: 44.1
2047 Male, age 72, unknown 50.9
1828 Male, age 53, unknown 45.7
2750 Male, age 76, both hemispheres 44.4
2298 Female, age 72, unknown 41.2
2016 Female, age 72, unknown 38.5
Inferior colliculus
nTPM: 38.0
2849 Male, age 72, unknown 40.0
1848 Female, age 42, unknown 38.4
1890 Male, age 53, unknown 36.7
2097 Female, age 72, unknown 36.7
Median raphe nucleus
nTPM: 50.0
2220 Male, age 76, midline 50.0
Pedunculopontine tegmental nucleus
nTPM: 42.8
2334 Male, age 80, both hemispheres 44.3
1921 Female, age 85, both hemispheres 44.1
2338 Male, age 61, both hemispheres 39.9
Periaquaductal grey, anterior
nTPM: 40.8
1947 Male, age 18, unknown 44.2
1795 Male, age 51, unknown 39.3
2502 Female, age 75, unknown 38.9
Periaquaductal grey, dorsal
nTPM: 37.2
1840 Male, age 53, unknown 40.4
2850 Male, age 76, both hemispheres 36.7
2464 Female, age 72, unknown 36.1
1831 Male, age 72, unknown 35.7
Periaquaductal grey, lateral
nTPM: 34.3
2053 Male, age 18, unknown 37.5
2140 Male, age 76, both hemispheres 33.4
2272 Male, age 74, both hemispheres 32.1
Pretectal area
nTPM: 35.6
2825 Male, age 18, unknown 43.3
2407 Male, age 75, both hemispheres 40.1
2224 Female, age 72, unknown 38.9
2667 Female, age 75, unknown 36.5
2316 Male, age 76, right hemisphere 34.5
1944 Female, age 72, unknown 34.1
2273 Male, age 74, both hemispheres 33.6
1815 Male, age 53, unknown 33.3
2007 Male, age 72, unknown 32.9
1816 Male, age 51, unknown 32.5
1817 Female, age 42, unknown 32.5
Red nucleus
nTPM: 40.7
1821 Female, age 72, unknown 47.2
2725 Female, age 75, unknown 45.6
2588 Male, age 74, left hemisphere 44.9
2584 Male, age 75, left hemisphere 42.3
1954 Female, age 42, unknown 41.0
1865 Male, age 51, unknown 40.1
2503 Female, age 72, unknown 39.6
1904 Male, age 53, unknown 39.5
2227 Male, age 72, unknown 39.3
2769 Male, age 72, unknown 38.9
2823 Male, age 76, right hemisphere 37.3
2785 Male, age 18, unknown 33.0
Substantia nigra
nTPM: 53.9
1916 Female, age 42, unknown 76.0
2699 Male, age 18, unknown 65.1
2241 Male, age 72, unknown 65.0
1851 Male, age 51, unknown 61.6
1941 Male, age 53, unknown 58.2
2409 Female, age 72, unknown 47.3
1889 Female, age 72, unknown 42.4
2665 Male, age 74, both hemispheres 41.5
2583 Male, age 75, right hemisphere 41.4
2590 Female, age 75, unknown 40.3
Superior colliculus
nTPM: 36.9
2668 Female, age 75, unknown 42.5
1796 Male, age 53, unknown 40.3
2664 Male, age 75, both hemispheres 39.3
2587 Male, age 74, left hemisphere 39.0
1895 Male, age 76, right hemisphere 38.3
1839 Male, age 51, unknown 37.8
1913 Female, age 42, unknown 34.7
2087 Female, age 72, unknown 33.4
2261 Male, age 18, unknown 32.8
1995 Male, age 72, unknown 30.8
Ventral tegmental area
nTPM: 51.5
1915 Female, age 42, unknown 58.7
2218 Male, age 76, both hemispheres 55.9
2223 Female, age 72, unknown 52.9
1942 Male, age 51, unknown 49.4
2410 Female, age 72, unknown 48.9
2021 Male, age 53, unknown 43.2

MIDBRAIN - GTEx RNA-seqi
Average nTPM 68.3
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 68.3
Samples: 139

Max nTPM: 148.9
Min nTPM: 31.1
Std nTPM: 19.8
Median nTPM: 65.8
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 148.9
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 136.1
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 125.5
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 124.5
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 112.1
GTEX-1B933-0011-R2b-SM-7IGNM 50-59 years, female 111.1
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 105.9
GTEX-1399T-0011-R2b-SM-5DUXM 60-69 years, male 99.6
GTEX-11GSP-0011-R2b-SM-9QEGE 60-69 years, female 97.7
GTEX-1GN73-0011-R2a-SM-CJI2V 60-69 years, male 97.1
GTEX-12ZZX-0011-R2a-SM-5EGLG 40-49 years, female 94.4
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 94.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 94.2
FF:10158-103A5 76 years, female 94.2

MIDBRAIN - Pig RNA-seqi
Average nTPM 47.0
Pig sample Sample description nTPM
Midbrain
nTPM: 37.7
Samples: 4

Max nTPM: 42.3
Min nTPM: 31.1
Sample A Female 42.3
Sample B Female 38.7
Sample C Male 31.1
Sample D Male 38.5
Periaqueductal gray
nTPM: 30.1
Samples: 3

Max nTPM: 34.9
Min nTPM: 26.1
Sample B Female 29.3
Sample C Male 34.9
Sample D Male 26.1
Substantia nigra
nTPM: 47.0
Samples: 4

Max nTPM: 60.8
Min nTPM: 34.4
Sample A Female 60.8
Sample B Female 37.7
Sample C Male 54.9
Sample D Male 34.4
Superior colliculi
nTPM: 35.5
Samples: 4

Max nTPM: 44.9
Min nTPM: 24.7
Sample A Female 44.9
Sample B Female 24.7
Sample C Male 34.7
Sample D Male 37.7

MIDBRAIN - Mouse RNA-seqi
Average nTPM 22.3
Mouse sample Sample description nTPM
Midbrain
nTPM: 22.3
Samples: 4

Max nTPM: 23.9
Min nTPM: 20.8
Sample A Male 23.0
Sample B Male 23.9
Sample C Female 21.5
Sample D Female 20.8

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 1.5
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 1.5
2453 Antisense, RP_Baylor_103278, Mouse strain C57BL/6J (56 days, male) 1.5
2452 Antisense, RP_Baylor_103278, Mouse strain C57BL/6J (56 days, male) 0.4

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The Human Protein Atlas

The Human Protein Atlas project is funded
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