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BASAL GANGLIA - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:22.4 nTPM
HPA:22.4 nTPM
GTEx:18.6 nTPM
FANTOM5:4.0 Scaled Tags Per Million
Pig:6.6 nTPM
Mouse:11.8 nTPM
Allen mouse:0.6 Expression energy

BASAL GANGLIA - Annotated protein expression
Pending normal tissue analysis

BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 22.4
Sample id Sample description nTPM
Caudate nucleus
nTPM: 19.4
2289 Male, age 61, right hemisphere 20.5
1854 Male, age 80, left hemisphere 20.1
2846 Female, age 79, unknown 19.9
2288 Male, age 75, left hemisphere 19.6
2290 Female, age 72, unknown 19.6
1781 Male, age 74, unknown 18.9
2481 Female, age 94, left hemisphere 18.4
1857 Female, age 85, left hemisphere 18.2
Claustrum
nTPM: 21.7
2284 Female, age 91, both hemispheres 22.3
2392 Female, age 94, both hemispheres 22.3
2292 Female, age 85, both hemispheres 22.2
2645 Female, age 72, unknown 22.2
1956 Male, age 74, unknown 22.1
2568 Male, age 61, both hemispheres 21.7
2491 Male, age 75, both hemispheres 21.5
2198 Male, age 80, both hemispheres 21.4
2196 Female, age 79, unknown 19.2
Globus pallidus, externus
nTPM: 22.1
2567 Female, age 72, unknown 24.4
2395 Male, age 75, both hemispheres 22.4
2772 Female, age 79, unknown 21.6
2646 Male, age 61, right hemisphere 21.2
1996 Male, age 80, right hemisphere 20.7
Globus pallidus, internus
nTPM: 22.4
2111 Female, age 85, right hemisphere 25.1
2037 Male, age 80, right hemisphere 23.7
2778 Female, age 91, both hemispheres 22.6
2566 Female, age 72, unknown 22.3
2483 Female, age 94, right hemisphere 21.2
1818 Male, age 74, unknown 20.9
2287 Male, age 75, right hemisphere 20.8
Nucleus accumbens
nTPM: 20.1
2824 Male, age 61, right hemisphere 21.5
1806 Female, age 85, left hemisphere 21.0
2286 Male, age 75, left hemisphere 21.0
2391 Female, age 94, left hemisphere 20.6
1783 Male, age 74, unknown 20.5
2732 Male, age 80, right hemisphere 19.9
1856 Female, age 91, right hemisphere 18.1
2698 Female, age 72, unknown 18.1
Nucleus basalis of Meynert
nTPM: 20.6
2569 Male, age 61, both hemispheres 21.3
2393 Male, age 80, right hemisphere 21.1
2484 Female, age 94, left hemisphere 20.9
2821 Male, age 75, both hemispheres 19.2
Nucleus of the diagonal band
nTPM: 20.9
2029 Male, age 61, right hemisphere 23.9
2775 Male, age 80, right hemisphere 21.7
1979 Male, age 74, unknown 20.2
1812 Female, age 91, both hemispheres 19.6
2195 Female, age 85, both hemispheres 19.1
Olfactory tubercle
nTPM: 21.2
1998 Female, age 91, both hemispheres 21.7
1846 Male, age 80, right hemisphere 21.4
2487 Female, age 94, left hemisphere 21.3
2856 Male, age 75, right hemisphere 20.2
Putamen
nTPM: 21.0
2489 Female, age 72, unknown 22.4
2466 Female, age 79, unknown 22.2
2647 Male, age 75, left hemisphere 21.8
1829 Male, age 74, unknown 20.7
1937 Female, age 91, right hemisphere 20.5
2482 Female, age 94, left hemisphere 19.9
1838 Male, age 80, right hemisphere 19.8
Septal nuclei
nTPM: 20.7
2009 Female, age 91, both hemispheres 22.4
1960 Male, age 74, unknown 21.3
2059 Female, age 85, both hemispheres 20.8
2031 Female, age 72, unknown 20.7
2394 Male, age 61, left hemisphere 20.2
2629 Female, age 94, right hemisphere 19.9
2199 Male, age 80, right hemisphere 19.4

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 18.6
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 17.2
Samples: 246

Max nTPM: 27.8
Min nTPM: 9.2
Std nTPM: 2.8
Median nTPM: 16.9
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 27.8
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 25.4
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 24.9
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 24.0
GTEX-1RNSC-0011-R5a-SM-EZ6N5 60-69 years, male 23.7
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 23.5
GTEX-1HSKV-0011-R5b-SM-ARZLN 60-69 years, male 23.3
GTEX-1J8EW-0011-R5b-SM-ARU8B 60-69 years, female 23.3
GTEX-1HBPI-0011-R5a-SM-CKZOW 50-59 years, male 23.1
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 22.8
GTEX-1GN1U-0011-R5a-SM-9QEIS 50-59 years, female 22.8
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 16.5
Samples: 246

Max nTPM: 33.8
Min nTPM: 8.2
Std nTPM: 2.9
Median nTPM: 16.2
GTEX-1RLM8-0011-R6a-SM-EYYXS 50-59 years, male 33.8
GTEX-144GO-0011-R6b-SM-5S2V7 60-69 years, male 24.5
GTEX-1J8Q2-0011-R6a-SM-CKZPG 60-69 years, male 24.1
GTEX-16Z82-0011-R6a-SM-7IGLV 60-69 years, male 23.3
GTEX-1IGQW-0011-R6a-SM-CM2TC 60-69 years, male 23.1
GTEX-18A6Q-0011-R6a-SM-7LG6R 60-69 years, male 22.7
GTEX-147F4-0011-R6b-SM-5S2UP 50-59 years, male 22.6
GTEX-X4XY-0011-R6B-SM-46MVB 60-69 years, male 22.6
GTEX-14753-0011-R6b-SM-5S2UD 60-69 years, male 22.4
GTEX-1LB8K-0011-R6a-SM-EXURT 50-59 years, male 22.4
GTEX-1LVAO-0011-R6b-SM-EZ6MX 60-69 years, male 22.0
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Brain - Putamen (basal ganglia)
Average nTPM: 18.6
Samples: 205

Max nTPM: 32.1
Min nTPM: 9.5
Std nTPM: 3.1
Median nTPM: 18.3
GTEX-13CF2-0011-R7b-SM-5K7UV 60-69 years, male 32.1
GTEX-1IKOH-0011-R7b-SM-CKZPH 60-69 years, female 28.8
GTEX-1LSNL-0011-R7a-SM-EYYWI 50-59 years, male 26.2
GTEX-12WSM-0011-R7b-SM-5EGLD 60-69 years, male 25.4
GTEX-ZV68-0011-R7a-SM-51MT4 50-59 years, female 25.2
GTEX-1AX9I-0011-R7b-SM-7P8Q3 60-69 years, male 25.0
GTEX-11DYG-0011-R7b-SM-EXUS6 60-69 years, male 24.9
GTEX-17EVP-0011-R7a-SM-7LTAN 40-49 years, male 24.8
GTEX-12WSA-0011-R7b-SM-5GU5U 60-69 years, male 24.4
GTEX-1LVA9-0011-R7a-SM-EYYWG 50-59 years, male 24.3
GTEX-ZDXO-0011-R7a-SM-4WWCU 60-69 years, male 24.2
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 4.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 2.3
FF:10164-103B2 76 years, female 2.3
Globus pallidus
Scaled Tags Per Million: 4.0
FF:10175-103C4 60 years, female 6.3
FF:10161-103A8 76 years, female 1.8
Nucleus accumbens
Scaled Tags Per Million: 3.0
FF:10037-101F1 23-56 years, mixed 3.0
Putamen
Scaled Tags Per Million: 0.8
FF:10176-103C5 60 years, female 0.8

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 6.6
Pig sample Sample description nTPM
Caudate
nTPM: 6.5
Samples: 4

Max nTPM: 7.4
Min nTPM: 5.2
Sample A Female 5.2
Sample B Female 6.8
Sample C Male 6.7
Sample D Male 7.4
Putamen
nTPM: 6.6
Samples: 4

Max nTPM: 7.7
Min nTPM: 5.7
Sample A Female 5.8
Sample B Female 5.7
Sample C Male 7.7
Sample D Male 7.2
Septum
nTPM: 6.1
Samples: 4

Max nTPM: 6.4
Min nTPM: 5.9
Sample A Female 6.4
Sample B Female 6.1
Sample C Male 6.0
Sample D Male 5.9
Ventral pallidum
nTPM: 5.8
Samples: 4

Max nTPM: 6.1
Min nTPM: 5.4
Sample A Female 5.9
Sample B Female 5.4
Sample C Male 6.1
Sample D Male 5.8

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 11.8
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 11.9
Samples: 4

Max nTPM: 17.7
Min nTPM: 7.5
Sample A Male 11.3
Sample B Male 17.7
Sample C Female 7.5
Sample D Female 10.9
Septum
nTPM: 7.2
Samples: 4

Max nTPM: 8.5
Min nTPM: 5.1
Sample A Male 8.1
Sample B Male 8.5
Sample C Female 7.2
Sample D Female 5.1
Ventral forebrain
nTPM: 11.8
Samples: 4

Max nTPM: 13.0
Min nTPM: 10.4
Sample A Male 13.0
Sample B Male 12.2
Sample C Female 11.5
Sample D Female 10.4

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 0.6
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 0.6
69874192 Antisense, RP_050512_02_H02, Mouse strain C57BL/6J (56 days, male) 0.7
73992919 Antisense, RP_051214_01_F11, Mouse strain C57BL/6J (56 days, male) 0.5
Pallidum
Expression energy: 0.2
69874192 Antisense, RP_050512_02_H02, Mouse strain C57BL/6J (56 days, male) 0.4
73992919 Antisense, RP_051214_01_F11, Mouse strain C57BL/6J (56 days, male) 0.1

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The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.