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SMUG1
HIPPOCAMPAL FORMATION - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:22.3 nTPM
HPA:22.3 nTPM
GTEx:18.1 nTPM
FANTOM5:4.0 Scaled Tags Per Million
Pig:5.8 nTPM
Mouse:9.8 nTPM
Allen mouse:0.3 Expression energy

HIPPOCAMPAL FORMATION - Annotated protein expression
Pending normal tissue analysis

HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 22.3
Sample id Sample description nTPM
Hippocampus
nTPM: 20.9
1855 Male, age 76, left hemisphere 22.1
1911 Female, age 85, right hemisphere 21.9
2148 Female, age 91, left hemisphere 20.7
2529 Female, age 94, left hemisphere 20.6
2621 Female, age 67, right hemisphere 20.3
1898 Male, age 80, left hemisphere 19.5
Dentate gyrus
nTPM: 21.0
1927 Female, age 91, both hemispheres 21.7
2531 Female, age 67, both hemispheres 21.6
2246 Female, age 85, both hemispheres 21.5
2528 Male, age 74, both hemispheres 21.1
2010 Male, age 76, both hemispheres 20.7
2530 Female, age 94, left hemisphere 19.2
Entorhinal gyrus
nTPM: 22.3
2613 Female, age 94, left hemisphere 23.6
2764 Male, age 80, right hemisphere 22.6
1938 Female, age 85, left hemisphere 22.4
2686 Male, age 75, right hemisphere 21.9
1787 Male, age 76, left hemisphere 21.8
2117 Female, age 91, right hemisphere 21.3
Hippocampus, CA1
nTPM: 22.2
2045 Male, age 76, both hemispheres 24.5
2749 Male, age 80, left hemisphere 22.4
2082 Female, age 91, right hemisphere 22.1
2527 Male, age 74, both hemispheres 21.1
1873 Female, age 85, both hemispheres 20.9
Hippocampus, CA2
nTPM: 21.2
1963 Male, age 80, left hemisphere 22.3
1940 Female, age 85, left hemisphere 22.2
2113 Female, age 91, right hemisphere 21.5
1892 Male, age 76, both hemispheres 20.9
2249 Male, age 74, both hemispheres 20.7
2437 Female, age 94, left hemisphere 19.4
Hippocampus, CA3
nTPM: 22.0
2137 Male, age 80, left hemisphere 24.6
2861 Female, age 67, both hemispheres 23.3
2620 Female, age 94, left hemisphere 23.0
1891 Female, age 85, both hemispheres 21.9
1867 Male, age 76, both hemispheres 20.0
2436 Male, age 74, both hemispheres 19.4
Parahippocampal cortex
nTPM: 21.2
2693 Female, age 94, both hemispheres 23.3
1850 Male, age 80, both hemispheres 22.0
2532 Female, age 72, left hemisphere 21.9
1990 Female, age 91, right hemisphere 21.6
2622 Female, age 67, right hemisphere 21.1
2018 Male, age 76, both hemispheres 21.0
1933 Female, age 85, both hemispheres 20.7
2692 Male, age 74, both hemispheres 20.6
2250 Female, age 67, right hemisphere 20.1
2245 Female, age 91, both hemispheres 19.4
Perirhinal gyrus
nTPM: 21.8
1847 Female, age 91, left hemisphere 22.7
1794 Male, age 80, right hemisphere 22.0
2521 Female, age 94, right hemisphere 21.6
1841 Female, age 85, right hemisphere 21.4
2848 Male, age 76, right hemisphere 21.1
Subiculum
nTPM: 21.0
2042 Male, age 76, both hemispheres 21.9
2619 Male, age 74, both hemispheres 21.5
2729 Female, age 91, right hemisphere 21.5
2438 Female, age 94, left hemisphere 20.8
1977 Female, age 85, both hemispheres 20.4
1901 Male, age 80, both hemispheres 20.3

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 18.1
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 18.1
Samples: 197

Max nTPM: 33.0
Min nTPM: 9.6
Std nTPM: 3.6
Median nTPM: 18.0
GTEX-144GL-0011-R1a-SM-5PNZ5 50-59 years, male 33.0
GTEX-1F75A-0011-R1b-SM-CE6RA 50-59 years, male 31.1
GTEX-1IOXB-0011-R1a-SM-D4P27 50-59 years, male 29.8
GTEX-17HG3-0011-R1a-SM-7LG6H 30-39 years, female 25.8
GTEX-13FXS-0011-R1a-SM-5K7U6 50-59 years, male 25.6
GTEX-14LLW-0011-R1a-SM-5ZZVD 70-79 years, female 25.5
GTEX-11EI6-0011-R1a-SM-DO93L 60-69 years, male 25.2
GTEX-1HT8W-0011-R1b-SM-CJI3V 30-39 years, male 25.1
GTEX-1J8Q2-0011-R1a-SM-D4P2D 60-69 years, male 25.1
GTEX-18A6Q-0011-R1b-SM-731DI 60-69 years, male 25.0
GTEX-17HHY-0011-R1a-SM-7189V 50-59 years, male 24.9
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 4.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 4.0
FF:10169-103B7 60 years, female 4.1
FF:10153-102I9 76 years, female 3.9

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 5.8
Pig sample Sample description nTPM
Dorsal hippocampus
nTPM: 5.6
Samples: 4

Max nTPM: 6.3
Min nTPM: 5.0
Sample A Female 6.3
Sample B Female 6.1
Sample C Male 5.0
Sample D Male 5.1
Entorhinal cortex
nTPM: 4.6
Samples: 4

Max nTPM: 5.1
Min nTPM: 4.1
Sample A Female 4.8
Sample B Female 5.1
Sample C Male 4.5
Sample D Male 4.1
Subiculum
nTPM: 5.0
Samples: 4

Max nTPM: 5.6
Min nTPM: 4.5
Sample A Female 5.6
Sample B Female 4.8
Sample C Male 5.2
Sample D Male 4.5
Ventral hippocampus
nTPM: 5.8
Samples: 4

Max nTPM: 6.4
Min nTPM: 4.8
Sample A Female 6.0
Sample B Female 4.8
Sample C Male 6.4
Sample D Male 5.9

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 9.8
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 9.8
Samples: 4

Max nTPM: 12.0
Min nTPM: 8.0
Sample A Male 9.8
Sample B Male 12.0
Sample C Female 9.5
Sample D Female 8.0
Hippocampal formation
nTPM: 8.9
Samples: 4

Max nTPM: 9.5
Min nTPM: 7.3
Sample A Male 9.5
Sample B Male 9.4
Sample C Female 7.3
Sample D Female 9.4

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 0.3
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 0.3
69874192 Antisense, RP_050512_02_H02, Mouse strain C57BL/6J (56 days, male) 0.4
73992919 Antisense, RP_051214_01_F11, Mouse strain C57BL/6J (56 days, male) 0.2

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The Human Protein Atlas

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