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RAP2C
MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:8.2 nTPM
HPA:8.2 nTPM
GTEx:9.7 nTPM
FANTOM5:10.3 Scaled Tags Per Million
Pig:14.4 nTPM
Mouse:25.9 nTPM
Allen mouse:0.8 Expression energy

MIDBRAIN - Annotated protein expression
Pending normal tissue analysis

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 8.2
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 7.9
2586 Male, age 75, left hemisphere 9.6
2666 Male, age 74, left hemisphere 8.6
1870 Female, age 42, unknown 8.2
1833 Male, age 53, unknown 8.0
2828 Female, age 72, unknown 7.8
1827 Male, age 72, unknown 7.7
1830 Male, age 51, unknown 7.6
2019 Male, age 18, unknown 7.3
2411 Female, age 72, unknown 7.3
2219 Male, age 76, both hemispheres 6.7
Dorsal raphe nucleus
nTPM: 7.8
1828 Male, age 53, unknown 8.4
2016 Female, age 72, unknown 8.2
2750 Male, age 76, both hemispheres 7.8
2298 Female, age 72, unknown 7.3
2047 Male, age 72, unknown 7.1
Inferior colliculus
nTPM: 7.5
2097 Female, age 72, unknown 7.7
1890 Male, age 53, unknown 7.6
1848 Female, age 42, unknown 7.5
2849 Male, age 72, unknown 7.2
Median raphe nucleus
nTPM: 7.7
2220 Male, age 76, midline 7.7
Pedunculopontine tegmental nucleus
nTPM: 7.9
2338 Male, age 61, both hemispheres 8.3
2334 Male, age 80, both hemispheres 8.1
1921 Female, age 85, both hemispheres 7.2
Periaquaductal grey, anterior
nTPM: 7.8
2502 Female, age 75, unknown 8.4
1947 Male, age 18, unknown 7.9
1795 Male, age 51, unknown 7.3
Periaquaductal grey, dorsal
nTPM: 7.7
1831 Male, age 72, unknown 8.1
2850 Male, age 76, both hemispheres 7.9
2464 Female, age 72, unknown 7.6
1840 Male, age 53, unknown 7.0
Periaquaductal grey, lateral
nTPM: 7.0
2140 Male, age 76, both hemispheres 7.1
2053 Male, age 18, unknown 6.9
2272 Male, age 74, both hemispheres 6.9
Pretectal area
nTPM: 7.7
1817 Female, age 42, unknown 8.4
1816 Male, age 51, unknown 8.3
1944 Female, age 72, unknown 8.3
1815 Male, age 53, unknown 7.9
2007 Male, age 72, unknown 7.9
2667 Female, age 75, unknown 7.7
2407 Male, age 75, both hemispheres 7.3
2273 Male, age 74, both hemispheres 7.2
2316 Male, age 76, right hemisphere 7.2
2825 Male, age 18, unknown 7.2
2224 Female, age 72, unknown 7.0
Red nucleus
nTPM: 7.8
1821 Female, age 72, unknown 8.2
2503 Female, age 72, unknown 8.1
2823 Male, age 76, right hemisphere 8.1
1954 Female, age 42, unknown 8.0
2725 Female, age 75, unknown 8.0
2584 Male, age 75, left hemisphere 7.9
1904 Male, age 53, unknown 7.7
2227 Male, age 72, unknown 7.7
2785 Male, age 18, unknown 7.7
2769 Male, age 72, unknown 7.4
1865 Male, age 51, unknown 7.3
2588 Male, age 74, left hemisphere 7.0
Substantia nigra
nTPM: 8.2
2699 Male, age 18, unknown 9.7
2583 Male, age 75, right hemisphere 9.0
2241 Male, age 72, unknown 8.7
1851 Male, age 51, unknown 8.5
2665 Male, age 74, both hemispheres 8.4
1889 Female, age 72, unknown 7.9
1916 Female, age 42, unknown 7.8
1941 Male, age 53, unknown 7.7
2590 Female, age 75, unknown 7.6
2409 Female, age 72, unknown 7.0
Superior colliculus
nTPM: 7.8
2664 Male, age 75, both hemispheres 9.3
1913 Female, age 42, unknown 8.3
1995 Male, age 72, unknown 8.0
1796 Male, age 53, unknown 7.8
1839 Male, age 51, unknown 7.6
2087 Female, age 72, unknown 7.5
2261 Male, age 18, unknown 7.5
2668 Female, age 75, unknown 7.5
2587 Male, age 74, left hemisphere 7.2
1895 Male, age 76, right hemisphere 6.9
Ventral tegmental area
nTPM: 7.9
1942 Male, age 51, unknown 8.4
1915 Female, age 42, unknown 8.0
2223 Female, age 72, unknown 8.0
2021 Male, age 53, unknown 7.9
2218 Male, age 76, both hemispheres 7.8
2410 Female, age 72, unknown 7.1

MIDBRAIN - GTEx RNA-seqi
Average nTPM 9.7
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 9.7
Samples: 139

Max nTPM: 26.3
Min nTPM: 5.7
Std nTPM: 2.3
Median nTPM: 9.6
GTEX-R55E-0011-R2A-SM-EYYV9 20-29 years, male 26.3
GTEX-QDT8-0011-R2A-SM-32PKQ 30-39 years, female 15.0
GTEX-1GZ2Q-0011-R2b-SM-9OSWO 40-49 years, male 15.0
GTEX-1EU9M-0011-R2b-SM-9QEH7 60-69 years, male 14.5
GTEX-QMR6-0011-R2A-SM-32PKV 50-59 years, male 14.0
GTEX-1JMQK-0011-R2a-SM-EYYXQ 60-69 years, male 13.7
GTEX-1GN1U-0011-R2a-SM-CL53A 50-59 years, female 13.6
GTEX-1C6VR-0011-R2a-SM-7RHGZ 60-69 years, male 13.4
GTEX-12WSA-0011-R2a-SM-57WDK 60-69 years, male 13.0
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 13.0
GTEX-14PN4-0011-R2a-SM-6EU2Y 50-59 years, male 12.9
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 10.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 10.3
FF:10158-103A5 76 years, female 10.3

MIDBRAIN - Pig RNA-seqi
Average nTPM 14.4
Pig sample Sample description nTPM
Midbrain
nTPM: 14.4
Samples: 4

Max nTPM: 18.6
Min nTPM: 11.6
Sample A Female 18.6
Sample B Female 14.0
Sample C Male 13.5
Sample D Male 11.6
Periaqueductal gray
nTPM: 13.4
Samples: 3

Max nTPM: 15.4
Min nTPM: 12.2
Sample B Female 12.7
Sample C Male 15.4
Sample D Male 12.2
Substantia nigra
nTPM: 13.4
Samples: 4

Max nTPM: 15.8
Min nTPM: 12.0
Sample A Female 15.8
Sample B Female 12.3
Sample C Male 13.6
Sample D Male 12.0
Superior colliculi
nTPM: 11.8
Samples: 4

Max nTPM: 14.5
Min nTPM: 8.4
Sample A Female 14.5
Sample B Female 8.4
Sample C Male 12.4
Sample D Male 11.7

MIDBRAIN - Mouse RNA-seqi
Average nTPM 25.9
Mouse sample Sample description nTPM
Midbrain
nTPM: 25.9
Samples: 4

Max nTPM: 26.5
Min nTPM: 24.7
Sample A Male 26.3
Sample B Male 26.5
Sample C Female 26.1
Sample D Female 24.7

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.8
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.8
69170108 Antisense, RP_050321_04_F05, Mouse strain C57BL/6J (56 days, male) 0.8

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.