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MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:30.4 nTPM
HPA:30.4 nTPM
GTEx:32.0 nTPM
FANTOM5:36.9 Scaled Tags Per Million
Pig:9.9 nTPM
Mouse:9.9 nTPM
Allen mouse:0.2 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 30.4
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 24.9
2586 Male, age 75, left hemisphere 34.3
2828 Female, age 72, unknown 30.8
1827 Male, age 72, unknown 25.8
2019 Male, age 18, unknown 25.5
2666 Male, age 74, left hemisphere 25.5
2219 Male, age 76, both hemispheres 25.3
2411 Female, age 72, unknown 24.6
1870 Female, age 42, unknown 20.2
1833 Male, age 53, unknown 19.1
1830 Male, age 51, unknown 18.1
Dorsal raphe nucleus
nTPM: 24.5
2298 Female, age 72, unknown 31.9
1828 Male, age 53, unknown 24.7
2047 Male, age 72, unknown 24.6
2016 Female, age 72, unknown 21.3
2750 Male, age 76, both hemispheres 20.3
Inferior colliculus
nTPM: 20.9
2097 Female, age 72, unknown 24.3
1890 Male, age 53, unknown 22.6
1848 Female, age 42, unknown 19.9
2849 Male, age 72, unknown 16.7
Median raphe nucleus
nTPM: 26.8
2220 Male, age 76, midline 26.8
Pedunculopontine tegmental nucleus
nTPM: 21.7
2334 Male, age 80, both hemispheres 25.0
1921 Female, age 85, both hemispheres 23.1
2338 Male, age 61, both hemispheres 16.9
Periaquaductal grey, anterior
nTPM: 30.4
1795 Male, age 51, unknown 35.5
2502 Female, age 75, unknown 30.6
1947 Male, age 18, unknown 25.2
Periaquaductal grey, dorsal
nTPM: 23.0
1831 Male, age 72, unknown 24.4
2850 Male, age 76, both hemispheres 23.3
2464 Female, age 72, unknown 22.5
1840 Male, age 53, unknown 21.9
Periaquaductal grey, lateral
nTPM: 22.0
2140 Male, age 76, both hemispheres 22.9
2272 Male, age 74, both hemispheres 22.1
2053 Male, age 18, unknown 20.9
Pretectal area
nTPM: 28.6
1816 Male, age 51, unknown 38.0
1944 Female, age 72, unknown 34.1
2007 Male, age 72, unknown 32.8
1817 Female, age 42, unknown 31.8
2667 Female, age 75, unknown 30.8
1815 Male, age 53, unknown 28.1
2273 Male, age 74, both hemispheres 27.9
2224 Female, age 72, unknown 26.5
2407 Male, age 75, both hemispheres 24.1
2825 Male, age 18, unknown 21.0
2316 Male, age 76, right hemisphere 19.4
Red nucleus
nTPM: 21.7
2725 Female, age 75, unknown 28.1
2785 Male, age 18, unknown 27.3
2584 Male, age 75, left hemisphere 26.3
2503 Female, age 72, unknown 24.2
2588 Male, age 74, left hemisphere 22.0
2769 Male, age 72, unknown 20.4
1904 Male, age 53, unknown 20.1
2227 Male, age 72, unknown 20.1
1954 Female, age 42, unknown 19.6
1821 Female, age 72, unknown 18.2
2823 Male, age 76, right hemisphere 17.3
1865 Male, age 51, unknown 16.4
Substantia nigra
nTPM: 24.7
1916 Female, age 42, unknown 33.5
1851 Male, age 51, unknown 29.3
1889 Female, age 72, unknown 27.1
2583 Male, age 75, right hemisphere 26.4
1941 Male, age 53, unknown 25.6
2665 Male, age 74, both hemispheres 22.6
2699 Male, age 18, unknown 21.3
2241 Male, age 72, unknown 21.1
2409 Female, age 72, unknown 20.0
2590 Female, age 75, unknown 19.7
Superior colliculus
nTPM: 25.5
2261 Male, age 18, unknown 35.6
2087 Female, age 72, unknown 32.6
1796 Male, age 53, unknown 30.8
1995 Male, age 72, unknown 29.5
2664 Male, age 75, both hemispheres 28.9
1913 Female, age 42, unknown 23.2
2668 Female, age 75, unknown 20.8
1839 Male, age 51, unknown 20.4
2587 Male, age 74, left hemisphere 18.3
1895 Male, age 76, right hemisphere 15.4
Ventral tegmental area
nTPM: 26.1
1942 Male, age 51, unknown 28.6
2410 Female, age 72, unknown 28.2
1915 Female, age 42, unknown 27.6
2021 Male, age 53, unknown 25.4
2218 Male, age 76, both hemispheres 25.1
2223 Female, age 72, unknown 21.4

MIDBRAIN - GTEx RNA-seqi
Average nTPM 32.0
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 32.0
Samples: 139

Max nTPM: 76.4
Min nTPM: 8.4
Std nTPM: 12.4
Median nTPM: 31.5
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 76.4
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 71.1
GTEX-13NYS-0011-R2b-SM-5MR4G 60-69 years, male 66.5
GTEX-13OW8-0011-R2a-SM-5L3G2 60-69 years, male 59.4
GTEX-11GSP-0011-R2b-SM-9QEGE 60-69 years, female 56.5
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 56.0
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 55.1
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 54.4
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 50.2
GTEX-14C5O-0011-R2a-SM-5ZZV2 60-69 years, male 48.4
GTEX-12ZZX-0011-R2a-SM-5EGLG 40-49 years, female 48.2
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 36.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 36.9
FF:10158-103A5 76 years, female 36.9

MIDBRAIN - Pig RNA-seqi
Average nTPM 9.9
Pig sample Sample description nTPM
Midbrain
nTPM: 9.5
Samples: 4

Max nTPM: 12.2
Min nTPM: 7.2
Sample A Female 10.2
Sample B Female 7.2
Sample C Male 12.2
Sample D Male 8.3
Periaqueductal gray
nTPM: 7.4
Samples: 3

Max nTPM: 8.5
Min nTPM: 6.6
Sample B Female 7.0
Sample C Male 8.5
Sample D Male 6.6
Substantia nigra
nTPM: 10.0
Samples: 4

Max nTPM: 12.9
Min nTPM: 6.7
Sample A Female 12.9
Sample B Female 8.5
Sample C Male 11.7
Sample D Male 6.7
Superior colliculi
nTPM: 9.7
Samples: 4

Max nTPM: 10.4
Min nTPM: 9.2
Sample A Female 10.4
Sample B Female 9.2
Sample C Male 9.7
Sample D Male 9.5

MIDBRAIN - Mouse RNA-seqi
Average nTPM 9.9
Mouse sample Sample description nTPM
Midbrain
nTPM: 9.9
Samples: 4

Max nTPM: 11.0
Min nTPM: 8.3
Sample A Male 10.8
Sample B Male 8.3
Sample C Female 9.6
Sample D Female 11.0

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.2
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.2
71580180 Antisense, RP_050915_04_D04, Mouse strain C57BL/6J (56 days, male) 0.2

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The Human Protein Atlas

The Human Protein Atlas project is funded
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