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BASAL GANGLIA - Expression summary
Protein expression
Caudatei
h
m
l
n
Glial cells: Not detected
Neuronal cells: Not detected
RNA expressioni
Consensus:3.7 nTPM
HPA:3.7 nTPM
GTEx:10.7 nTPM
FANTOM5:13.2 Scaled Tags Per Million
Pig:0.6 nTPM
Mouse:7.2 nTPM
Allen mouse:2.3 Expression energy

CAUDATE - Antibody stainingi
Antibody HPA019141Antibody CAB000047
Glial cells Not detectedNot detected
Neuronal cells LowNot detected



BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 3.7
Sample id Sample description nTPM
Caudate nucleus
nTPM: 3.4
1857 Female, age 85, left hemisphere 3.9
2290 Female, age 72, unknown 3.8
1854 Male, age 80, left hemisphere 3.6
1781 Male, age 74, unknown 3.5
2846 Female, age 79, unknown 3.3
2289 Male, age 61, right hemisphere 3.2
2288 Male, age 75, left hemisphere 2.9
2481 Female, age 94, left hemisphere 2.6
Claustrum
nTPM: 3.1
2645 Female, age 72, unknown 4.2
2284 Female, age 91, both hemispheres 3.2
2196 Female, age 79, unknown 3.1
2198 Male, age 80, both hemispheres 3.1
2491 Male, age 75, both hemispheres 3.1
2392 Female, age 94, both hemispheres 2.9
2292 Female, age 85, both hemispheres 2.8
2568 Male, age 61, both hemispheres 2.8
1956 Male, age 74, unknown 2.5
Globus pallidus, externus
nTPM: 2.3
2646 Male, age 61, right hemisphere 2.6
2395 Male, age 75, both hemispheres 2.5
2567 Female, age 72, unknown 2.3
1996 Male, age 80, right hemisphere 2.1
2772 Female, age 79, unknown 2.1
Globus pallidus, internus
nTPM: 2.2
2483 Female, age 94, right hemisphere 2.9
2566 Female, age 72, unknown 2.3
2037 Male, age 80, right hemisphere 2.2
2287 Male, age 75, right hemisphere 2.1
1818 Male, age 74, unknown 2.0
2111 Female, age 85, right hemisphere 2.0
2778 Female, age 91, both hemispheres 1.9
Nucleus accumbens
nTPM: 3.7
1856 Female, age 91, right hemisphere 4.7
1806 Female, age 85, left hemisphere 4.3
1783 Male, age 74, unknown 4.0
2698 Female, age 72, unknown 3.8
2824 Male, age 61, right hemisphere 3.6
2732 Male, age 80, right hemisphere 3.3
2286 Male, age 75, left hemisphere 2.9
2391 Female, age 94, left hemisphere 2.6
Nucleus basalis of Meynert
nTPM: 3.2
2393 Male, age 80, right hemisphere 3.7
2484 Female, age 94, left hemisphere 3.2
2569 Male, age 61, both hemispheres 3.1
2821 Male, age 75, both hemispheres 2.8
Nucleus of the diagonal band
nTPM: 3.4
2195 Female, age 85, both hemispheres 4.0
1979 Male, age 74, unknown 3.9
2775 Male, age 80, right hemisphere 3.1
1812 Female, age 91, both hemispheres 3.0
2029 Male, age 61, right hemisphere 2.9
Olfactory tubercle
nTPM: 3.1
2856 Male, age 75, right hemisphere 3.4
1998 Female, age 91, both hemispheres 3.3
2487 Female, age 94, left hemisphere 3.0
1846 Male, age 80, right hemisphere 2.9
Putamen
nTPM: 3.6
2489 Female, age 72, unknown 4.5
1838 Male, age 80, right hemisphere 4.4
2647 Male, age 75, left hemisphere 3.5
2466 Female, age 79, unknown 3.4
1937 Female, age 91, right hemisphere 3.3
1829 Male, age 74, unknown 3.0
2482 Female, age 94, left hemisphere 2.9
Septal nuclei
nTPM: 3.1
2059 Female, age 85, both hemispheres 4.0
1960 Male, age 74, unknown 3.6
2031 Female, age 72, unknown 3.0
2009 Female, age 91, both hemispheres 2.9
2629 Female, age 94, right hemisphere 2.8
2199 Male, age 80, right hemisphere 2.7
2394 Male, age 61, left hemisphere 2.7

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 10.7
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 6.7
Samples: 246

Max nTPM: 19.2
Min nTPM: 0.3
Std nTPM: 3.2
Median nTPM: 6.2
GTEX-1I1GS-0011-R5a-SM-CKZPC 60-69 years, male 19.2
GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 18.4
GTEX-13FHO-0011-R5b-SM-5LZZ3 60-69 years, male 15.8
GTEX-P44H-0011-R5A-SM-2XCEX 40-49 years, male 15.8
GTEX-13CZV-0011-R5a-SM-5K7XA 60-69 years, male 15.5
GTEX-1I19N-0011-R5b-SM-ARU6X 70-79 years, male 14.4
GTEX-14LLW-0011-R5b-SM-5ZZU6 70-79 years, female 14.0
GTEX-1JMPZ-0011-R5b-SM-EYYWY 30-39 years, male 13.8
GTEX-1HBPI-0011-R5a-SM-CKZOW 50-59 years, male 13.6
GTEX-ZE7O-0011-R5a-SM-57WBO 50-59 years, female 13.3
GTEX-14PJO-0011-R5a-SM-6AJBZ 60-69 years, male 13.2
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 10.7
Samples: 246

Max nTPM: 41.0
Min nTPM: 0.5
Std nTPM: 6.2
Median nTPM: 9.5
GTEX-17EVQ-0011-R6a-SM-7189U 70-79 years, male 41.0
GTEX-1GMRU-0011-R6b-SM-A9G3B 50-59 years, male 31.3
GTEX-13FHO-0011-R6b-SM-5LZX1 60-69 years, male 30.5
GTEX-12WSE-0011-R6b-SM-5LZV5 20-29 years, male 30.2
GTEX-ZE7O-0011-R6a-SM-57WCI 50-59 years, female 30.2
GTEX-132Q8-0011-R6a-SM-5K7YN 60-69 years, male 27.8
GTEX-17MF6-0011-R6b-SM-7LG6G 40-49 years, male 26.4
GTEX-1H1ZS-0011-R6b-SM-A9G1F 70-79 years, male 25.9
GTEX-1LH75-0011-R6a-SM-EXURS 50-59 years, female 25.5
GTEX-144GL-0011-R6a-SM-5P9HW 50-59 years, male 22.7
GTEX-1H3VE-0011-R6b-SM-A9G1M 40-49 years, male 22.7
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Brain - Putamen (basal ganglia)
Average nTPM: 7.5
Samples: 205

Max nTPM: 28.2
Min nTPM: 0.5
Std nTPM: 4.0
Median nTPM: 6.9
GTEX-1LH75-0011-R7a-SM-EXOIF 50-59 years, female 28.2
GTEX-132Q8-0011-R7b-SM-5N9F1 60-69 years, male 19.8
GTEX-13FHO-0011-R7b-SM-5LZXD 60-69 years, male 19.0
GTEX-ZDXO-0011-R7a-SM-4WWCU 60-69 years, male 18.0
GTEX-1J8Q2-0011-R7a-SM-CKZPF 60-69 years, male 17.9
GTEX-16Z82-0011-R7a-SM-7MKGJ 60-69 years, male 17.3
GTEX-15RJE-0011-R7a-SM-7DHL9 40-49 years, male 17.2
GTEX-11TTK-0011-R7b-SM-DNZZZ 60-69 years, female 16.7
GTEX-1HCVE-0011-R7b-SM-A9G1I 50-59 years, male 15.9
GTEX-1JMQK-0011-R7b-SM-EXUTF 60-69 years, male 15.5
GTEX-1HT8W-0011-R7b-SM-CMKH8 30-39 years, male 15.0
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 13.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 0.1
FF:10164-103B2 76 years, female 0.1
Globus pallidus
Scaled Tags Per Million: 0.0
FF:10175-103C4 60 years, female 0.0
FF:10161-103A8 76 years, female 0.0
Nucleus accumbens
Scaled Tags Per Million: 13.2
FF:10037-101F1 23-56 years, mixed 13.2
Putamen
Scaled Tags Per Million: 0.0
FF:10176-103C5 60 years, female 0.0

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 0.6
Pig sample Sample description nTPM
Caudate
nTPM: 0.6
Samples: 4

Max nTPM: 0.8
Min nTPM: 0.2
Sample A Female 0.2
Sample B Female 0.8
Sample C Male 0.7
Sample D Male 0.5
Putamen
nTPM: 0.3
Samples: 4

Max nTPM: 0.3
Min nTPM: 0.2
Sample A Female 0.2
Sample B Female 0.3
Sample C Male 0.3
Sample D Male 0.3
Septum
nTPM: 0.5
Samples: 4

Max nTPM: 0.7
Min nTPM: 0.3
Sample A Female 0.4
Sample B Female 0.6
Sample C Male 0.7
Sample D Male 0.3
Ventral pallidum
nTPM: 0.6
Samples: 4

Max nTPM: 0.7
Min nTPM: 0.4
Sample A Female 0.4
Sample B Female 0.6
Sample C Male 0.7
Sample D Male 0.6

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 7.2
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 5.5
Samples: 4

Max nTPM: 6.2
Min nTPM: 5.3
Sample A Male 5.3
Sample B Male 5.3
Sample C Female 5.3
Sample D Female 6.2
Septum
nTPM: 3.6
Samples: 4

Max nTPM: 5.2
Min nTPM: 2.4
Sample A Male 5.2
Sample B Male 3.5
Sample C Female 2.4
Sample D Female 3.2
Ventral forebrain
nTPM: 7.2
Samples: 4

Max nTPM: 9.0
Min nTPM: 5.7
Sample A Male 9.0
Sample B Male 6.7
Sample C Female 5.7
Sample D Female 7.5

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 2.3
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 2.3
69028653 Antisense, RP_050316_01_G03, Mouse strain C57BL/6J (56 days, male) 2.3
Pallidum
Expression energy: 2.2
69028653 Antisense, RP_050316_01_G03, Mouse strain C57BL/6J (56 days, male) 2.2

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.