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BASAL GANGLIA - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:38.9 nTPM
HPA:38.9 nTPM
GTEx:31.5 nTPM
FANTOM5:168.1 Scaled Tags Per Million
Pig:32.8 nTPM
Mouse:61.5 nTPM
Allen mouse:0.3 Expression energy

BASAL GANGLIA - Annotated protein expression
Pending normal tissue analysis

BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 38.9
Sample id Sample description nTPM
Caudate nucleus
nTPM: 30.5
2288 Male, age 75, left hemisphere 33.6
2290 Female, age 72, unknown 31.9
2846 Female, age 79, unknown 31.8
1781 Male, age 74, unknown 30.0
2289 Male, age 61, right hemisphere 30.0
2481 Female, age 94, left hemisphere 29.5
1857 Female, age 85, left hemisphere 29.0
1854 Male, age 80, left hemisphere 28.2
Claustrum
nTPM: 29.8
2292 Female, age 85, both hemispheres 34.6
2568 Male, age 61, both hemispheres 32.4
1956 Male, age 74, unknown 32.2
2198 Male, age 80, both hemispheres 31.7
2196 Female, age 79, unknown 30.1
2491 Male, age 75, both hemispheres 28.8
2284 Female, age 91, both hemispheres 26.8
2645 Female, age 72, unknown 26.3
2392 Female, age 94, both hemispheres 25.7
Globus pallidus, externus
nTPM: 36.7
2772 Female, age 79, unknown 43.7
1996 Male, age 80, right hemisphere 39.9
2395 Male, age 75, both hemispheres 36.5
2567 Female, age 72, unknown 32.1
2646 Male, age 61, right hemisphere 31.6
Globus pallidus, internus
nTPM: 38.9
2287 Male, age 75, right hemisphere 47.5
2778 Female, age 91, both hemispheres 45.3
2111 Female, age 85, right hemisphere 42.6
2566 Female, age 72, unknown 36.5
2037 Male, age 80, right hemisphere 35.8
1818 Male, age 74, unknown 34.2
2483 Female, age 94, right hemisphere 30.5
Nucleus accumbens
nTPM: 29.7
2286 Male, age 75, left hemisphere 33.3
2698 Female, age 72, unknown 33.3
2391 Female, age 94, left hemisphere 33.0
1806 Female, age 85, left hemisphere 30.6
1783 Male, age 74, unknown 28.4
1856 Female, age 91, right hemisphere 28.2
2732 Male, age 80, right hemisphere 26.4
2824 Male, age 61, right hemisphere 24.0
Nucleus basalis of Meynert
nTPM: 31.9
2821 Male, age 75, both hemispheres 35.6
2484 Female, age 94, left hemisphere 32.9
2569 Male, age 61, both hemispheres 31.2
2393 Male, age 80, right hemisphere 27.8
Nucleus of the diagonal band
nTPM: 28.0
1812 Female, age 91, both hemispheres 31.1
2775 Male, age 80, right hemisphere 29.7
2029 Male, age 61, right hemisphere 27.9
2195 Female, age 85, both hemispheres 26.7
1979 Male, age 74, unknown 24.9
Olfactory tubercle
nTPM: 27.8
2856 Male, age 75, right hemisphere 28.3
1846 Male, age 80, right hemisphere 28.2
2487 Female, age 94, left hemisphere 27.9
1998 Female, age 91, both hemispheres 26.7
Putamen
nTPM: 29.9
1829 Male, age 74, unknown 31.8
2482 Female, age 94, left hemisphere 31.5
2466 Female, age 79, unknown 30.8
2647 Male, age 75, left hemisphere 29.8
2489 Female, age 72, unknown 29.6
1937 Female, age 91, right hemisphere 28.4
1838 Male, age 80, right hemisphere 27.8
Septal nuclei
nTPM: 27.9
2394 Male, age 61, left hemisphere 30.2
2629 Female, age 94, right hemisphere 28.8
1960 Male, age 74, unknown 28.7
2031 Female, age 72, unknown 28.3
2199 Male, age 80, right hemisphere 27.1
2009 Female, age 91, both hemispheres 26.1
2059 Female, age 85, both hemispheres 26.1

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 31.5
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 25.3
Samples: 246

Max nTPM: 47.4
Min nTPM: 14.7
Std nTPM: 6.4
Median nTPM: 24.0
GTEX-1R9PO-0011-R5a-SM-EZ6NA 60-69 years, female 47.4
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 43.0
GTEX-14753-0011-R5a-SM-5S2VW 60-69 years, male 42.7
GTEX-1E1VI-0011-R5b-SM-9WG5V 50-59 years, male 42.3
GTEX-1RNSC-0011-R5a-SM-EZ6N5 60-69 years, male 42.2
GTEX-17MF6-0011-R5a-SM-731BA 40-49 years, male 41.7
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 41.3
GTEX-1GN1U-0011-R5a-SM-9QEIS 50-59 years, female 40.4
GTEX-1EN7A-0011-R5a-SM-9QEH6 40-49 years, male 39.9
GTEX-1C6VR-0011-R5a-SM-9QEH1 60-69 years, male 39.5
GTEX-1GN2E-0011-R5b-SM-CJI2M 60-69 years, male 39.2
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 22.5
Samples: 246

Max nTPM: 53.9
Min nTPM: 10.5
Std nTPM: 5.9
Median nTPM: 21.1
GTEX-1HFI6-0011-R6b-SM-CM2SR 40-49 years, male 53.9
GTEX-14753-0011-R6b-SM-5S2UD 60-69 years, male 42.2
GTEX-16Z82-0011-R6a-SM-7IGLV 60-69 years, male 40.5
GTEX-1RLM8-0011-R6a-SM-EYYXS 50-59 years, male 39.3
GTEX-1LC47-0011-R6b-SM-EZ6MI 60-69 years, male 38.5
GTEX-1R46S-0011-R6a-SM-EZ6N6 60-69 years, female 37.1
GTEX-1C6WA-0011-R6a-SM-7PBYP 60-69 years, male 37.0
GTEX-1A8G6-0011-R6b-SM-7P8PE 60-69 years, male 36.6
GTEX-12WSD-0011-R6b-SM-5P9JU 60-69 years, female 35.5
GTEX-ZUA1-0011-R6b-SM-4YCDD 40-49 years, male 35.5
GTEX-1J8Q2-0011-R6a-SM-CKZPG 60-69 years, male 34.3
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Brain - Putamen (basal ganglia)
Average nTPM: 31.5
Samples: 205

Max nTPM: 62.0
Min nTPM: 11.5
Std nTPM: 8.1
Median nTPM: 30.9
GTEX-1LSNL-0011-R7a-SM-EYYWI 50-59 years, male 62.0
GTEX-1I1CD-0011-R7a-SM-CMKHA 60-69 years, female 60.2
GTEX-17MF6-0011-R7b-SM-7LG6J 40-49 years, male 53.6
GTEX-1R46S-0011-R7b-SM-EXUTH 60-69 years, female 52.0
GTEX-1GMRU-0011-R7b-SM-A96TJ 50-59 years, male 51.5
GTEX-13OW8-0011-R7a-SM-5L3FP 60-69 years, male 50.8
GTEX-1C6WA-0011-R7b-SM-7P8S8 60-69 years, male 50.6
GTEX-15DYW-0011-R7a-SM-7KULG 60-69 years, female 49.7
GTEX-1GN2E-0011-R7b-SM-9QEIJ 60-69 years, male 47.5
GTEX-13CF2-0011-R7b-SM-5K7UV 60-69 years, male 46.4
GTEX-1B996-0011-R7b-SM-7IGNT 60-69 years, male 45.2
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 168.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 83.7
FF:10164-103B2 76 years, female 83.7
Globus pallidus
Scaled Tags Per Million: 168.1
FF:10175-103C4 60 years, female 174.4
FF:10161-103A8 76 years, female 161.8
Nucleus accumbens
Scaled Tags Per Million: 159.3
FF:10037-101F1 23-56 years, mixed 159.3
Putamen
Scaled Tags Per Million: 105.4
FF:10176-103C5 60 years, female 105.4

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 32.8
Pig sample Sample description nTPM
Caudate
nTPM: 28.4
Samples: 4

Max nTPM: 34.6
Min nTPM: 23.9
Sample A Female 23.9
Sample B Female 28.2
Sample C Male 34.6
Sample D Male 26.7
Putamen
nTPM: 32.9
Samples: 4

Max nTPM: 39.4
Min nTPM: 24.4
Sample A Female 32.4
Sample B Female 24.4
Sample C Male 35.2
Sample D Male 39.4
Septum
nTPM: 27.4
Samples: 4

Max nTPM: 31.0
Min nTPM: 25.1
Sample A Female 26.3
Sample B Female 25.1
Sample C Male 31.0
Sample D Male 27.3
Ventral pallidum
nTPM: 30.1
Samples: 4

Max nTPM: 37.5
Min nTPM: 23.2
Sample A Female 23.2
Sample B Female 25.7
Sample C Male 37.5
Sample D Male 34.1

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 61.5
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 50.7
Samples: 4

Max nTPM: 55.3
Min nTPM: 44.3
Sample A Male 52.7
Sample B Male 55.3
Sample C Female 44.3
Sample D Female 50.3
Septum
nTPM: 61.5
Samples: 4

Max nTPM: 64.0
Min nTPM: 56.8
Sample A Male 64.0
Sample B Male 61.2
Sample C Female 64.0
Sample D Female 56.8
Ventral forebrain
nTPM: 61.3
Samples: 4

Max nTPM: 66.9
Min nTPM: 57.1
Sample A Male 57.1
Sample B Male 63.0
Sample C Female 66.9
Sample D Female 58.0

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 0.3
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 0.1
1811 Antisense, RP_040604_01_B08, Mouse strain C57BL/6J (56 days, male) 0.1
1810 Antisense, RP_040604_01_B08, Mouse strain C57BL/6J (56 days, male) 0.1
Pallidum
Expression energy: 0.3
1811 Antisense, RP_040604_01_B08, Mouse strain C57BL/6J (56 days, male) 0.3
1810 Antisense, RP_040604_01_B08, Mouse strain C57BL/6J (56 days, male) 0.3

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The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.