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HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: Low
Neuronal cells: High
RNA expressioni
Consensus:28.8 nTPM
HPA:28.8 nTPM
GTEx:27.0 nTPM
FANTOM5:82.9 Scaled Tags Per Million
Pig:69.9 nTPM
Mouse:34.1 nTPM
Allen mouse:3.6 Expression energy

HIPPOCAMPUS - Antibody stainingi
Antibody HPA013144Antibody CAB013722
Glial cells LowMedium
Neuronal cells HighHigh




HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 28.8
Sample id Sample description nTPM
Hippocampus
nTPM: 26.7
1898 Male, age 80, left hemisphere 30.8
2529 Female, age 94, left hemisphere 27.5
2621 Female, age 67, right hemisphere 26.8
2148 Female, age 91, left hemisphere 26.7
1855 Male, age 76, left hemisphere 25.3
1911 Female, age 85, right hemisphere 23.3
Dentate gyrus
nTPM: 27.7
2530 Female, age 94, left hemisphere 31.4
1927 Female, age 91, both hemispheres 29.6
2010 Male, age 76, both hemispheres 26.6
2531 Female, age 67, both hemispheres 26.5
2246 Female, age 85, both hemispheres 26.3
2528 Male, age 74, both hemispheres 26.0
Entorhinal gyrus
nTPM: 27.5
2686 Male, age 75, right hemisphere 28.8
2764 Male, age 80, right hemisphere 28.7
1938 Female, age 85, left hemisphere 28.2
1787 Male, age 76, left hemisphere 28.0
2117 Female, age 91, right hemisphere 26.0
2613 Female, age 94, left hemisphere 25.5
Hippocampus, CA1
nTPM: 28.8
2749 Male, age 80, left hemisphere 37.6
1873 Female, age 85, both hemispheres 29.5
2527 Male, age 74, both hemispheres 26.6
2045 Male, age 76, both hemispheres 25.6
2082 Female, age 91, right hemisphere 24.6
Hippocampus, CA2
nTPM: 28.1
1892 Male, age 76, both hemispheres 34.6
1963 Male, age 80, left hemisphere 32.9
2437 Female, age 94, left hemisphere 28.2
2249 Male, age 74, both hemispheres 25.8
2113 Female, age 91, right hemisphere 24.1
1940 Female, age 85, left hemisphere 22.9
Hippocampus, CA3
nTPM: 26.7
2137 Male, age 80, left hemisphere 29.4
2861 Female, age 67, both hemispheres 28.4
1867 Male, age 76, both hemispheres 28.3
1891 Female, age 85, both hemispheres 26.1
2620 Female, age 94, left hemisphere 25.7
2436 Male, age 74, both hemispheres 22.3
Parahippocampal cortex
nTPM: 25.8
1850 Male, age 80, both hemispheres 32.0
2692 Male, age 74, both hemispheres 28.1
1990 Female, age 91, right hemisphere 27.5
2532 Female, age 72, left hemisphere 26.3
1933 Female, age 85, both hemispheres 26.2
2245 Female, age 91, both hemispheres 25.8
2622 Female, age 67, right hemisphere 23.9
2693 Female, age 94, both hemispheres 23.3
2018 Male, age 76, both hemispheres 22.6
2250 Female, age 67, right hemisphere 22.6
Perirhinal gyrus
nTPM: 28.8
1794 Male, age 80, right hemisphere 32.7
1847 Female, age 91, left hemisphere 30.6
1841 Female, age 85, right hemisphere 27.9
2848 Male, age 76, right hemisphere 27.5
2521 Female, age 94, right hemisphere 25.1
Subiculum
nTPM: 26.2
1901 Male, age 80, both hemispheres 28.5
2438 Female, age 94, left hemisphere 28.3
1977 Female, age 85, both hemispheres 27.4
2729 Female, age 91, right hemisphere 25.7
2619 Male, age 74, both hemispheres 25.6
2042 Male, age 76, both hemispheres 21.8

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 27.0
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 27.0
Samples: 197

Max nTPM: 39.5
Min nTPM: 14.0
Std nTPM: 5.1
Median nTPM: 26.6
GTEX-13O3O-0011-R1b-SM-5KM2K 60-69 years, female 39.5
GTEX-144GL-0011-R1a-SM-5PNZ5 50-59 years, male 39.4
GTEX-139TT-0011-R1a-SM-5LZVD 60-69 years, male 39.1
GTEX-N7MS-0011-R1a-SM-2HMJG 60-69 years, male 38.5
GTEX-1F75A-0011-R1b-SM-CE6RA 50-59 years, male 37.5
GTEX-11ZTS-0011-R1a-SM-5BC71 60-69 years, female 37.3
GTEX-13NYB-0011-R1b-SM-5KM4F 40-49 years, male 36.3
GTEX-1IOXB-0011-R1a-SM-D4P27 50-59 years, male 36.2
GTEX-13112-0011-R1b-SM-5HL7K 50-59 years, male 36.1
GTEX-1CB4G-0011-R1b-SM-9QEHT 60-69 years, male 36.1
GTEX-13O3Q-0011-R1b-SM-5KM3L 50-59 years, male 35.9
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 82.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 82.9
FF:10169-103B7 60 years, female 87.8
FF:10153-102I9 76 years, female 77.9

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 69.9
Pig sample Sample description nTPM
Dorsal hippocampus
nTPM: 69.9
Samples: 4

Max nTPM: 90.9
Min nTPM: 53.9
Sample A Female 90.9
Sample B Female 67.2
Sample C Male 67.5
Sample D Male 53.9
Entorhinal cortex
nTPM: 61.0
Samples: 4

Max nTPM: 66.9
Min nTPM: 56.4
Sample A Female 66.9
Sample B Female 62.2
Sample C Male 58.3
Sample D Male 56.4
Subiculum
nTPM: 61.8
Samples: 4

Max nTPM: 80.8
Min nTPM: 53.9
Sample A Female 80.8
Sample B Female 57.7
Sample C Male 54.7
Sample D Male 53.9
Ventral hippocampus
nTPM: 64.7
Samples: 4

Max nTPM: 74.1
Min nTPM: 47.3
Sample A Female 67.7
Sample B Female 47.3
Sample C Male 69.5
Sample D Male 74.1

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 34.1
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 34.1
Samples: 4

Max nTPM: 35.8
Min nTPM: 32.9
Sample A Male 33.2
Sample B Male 34.5
Sample C Female 32.9
Sample D Female 35.8
Hippocampal formation
nTPM: 31.5
Samples: 4

Max nTPM: 31.9
Min nTPM: 31.2
Sample A Male 31.2
Sample B Male 31.9
Sample C Female 31.3
Sample D Female 31.7

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 3.6
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 3.6
68745305 Antisense, RP_050210_01_F07, Mouse strain C57BL/6J (56 days, male) 7.2
71152461 Antisense, RP_050719_04_A08, Mouse strain C57BL/6J (56 days, male) 0.0

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The Human Protein Atlas

The Human Protein Atlas project is funded
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