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PACSIN1
HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: Not detected
Neuronal cells: High
RNA expressioni
Consensus:64.4 nTPM
HPA:64.4 nTPM
GTEx:142.1 nTPM
FANTOM5:230.0 Scaled Tags Per Million
Pig:80.9 nTPM
Mouse:145.3 nTPM
Allen mouse:19.0 Expression energy

HIPPOCAMPUS - Antibody stainingi
Antibody HPA028852Antibody HPA055491Antibody CAB009929
Glial cells Not detectedLowNot detected
Neuronal cells HighLowHigh







HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 64.4
Sample id Sample description nTPM
Hippocampus
nTPM: 30.1
2621 Female, age 67, right hemisphere 71.7
2148 Female, age 91, left hemisphere 38.2
2529 Female, age 94, left hemisphere 33.0
1898 Male, age 80, left hemisphere 20.8
1911 Female, age 85, right hemisphere 8.6
1855 Male, age 76, left hemisphere 8.1
Dentate gyrus
nTPM: 30.0
2531 Female, age 67, both hemispheres 72.0
1927 Female, age 91, both hemispheres 45.6
2530 Female, age 94, left hemisphere 34.4
2528 Male, age 74, both hemispheres 17.4
2246 Female, age 85, both hemispheres 10.4
2010 Male, age 76, both hemispheres 0.0
Entorhinal gyrus
nTPM: 45.4
2613 Female, age 94, left hemisphere 113.8
2686 Male, age 75, right hemisphere 57.9
2764 Male, age 80, right hemisphere 46.7
1938 Female, age 85, left hemisphere 32.1
1787 Male, age 76, left hemisphere 21.8
2117 Female, age 91, right hemisphere 0.0
Hippocampus, CA1
nTPM: 25.3
2527 Male, age 74, both hemispheres 51.7
2749 Male, age 80, left hemisphere 50.5
1873 Female, age 85, both hemispheres 15.5
2082 Female, age 91, right hemisphere 8.8
2045 Male, age 76, both hemispheres 0.0
Hippocampus, CA2
nTPM: 24.8
1963 Male, age 80, left hemisphere 43.7
2437 Female, age 94, left hemisphere 38.4
2113 Female, age 91, right hemisphere 35.6
1892 Male, age 76, both hemispheres 21.4
1940 Female, age 85, left hemisphere 8.1
2249 Male, age 74, both hemispheres 1.4
Hippocampus, CA3
nTPM: 37.1
2861 Female, age 67, both hemispheres 97.3
2620 Female, age 94, left hemisphere 84.6
2137 Male, age 80, left hemisphere 38.2
2436 Male, age 74, both hemispheres 2.7
1867 Male, age 76, both hemispheres 0.0
1891 Female, age 85, both hemispheres 0.0
Parahippocampal cortex
nTPM: 47.3
2245 Female, age 91, both hemispheres 91.6
2622 Female, age 67, right hemisphere 91.1
2693 Female, age 94, both hemispheres 66.5
2250 Female, age 67, right hemisphere 47.8
1850 Male, age 80, both hemispheres 41.1
2692 Male, age 74, both hemispheres 37.4
2532 Female, age 72, left hemisphere 34.5
1990 Female, age 91, right hemisphere 32.8
1933 Female, age 85, both hemispheres 29.8
2018 Male, age 76, both hemispheres 0.0
Perirhinal gyrus
nTPM: 64.4
2521 Female, age 94, right hemisphere 96.0
1847 Female, age 91, left hemisphere 80.4
1794 Male, age 80, right hemisphere 59.9
1841 Female, age 85, right hemisphere 50.8
2848 Male, age 76, right hemisphere 35.0
Subiculum
nTPM: 6.8
2619 Male, age 74, both hemispheres 35.9
1977 Female, age 85, both hemispheres 4.2
2438 Female, age 94, left hemisphere 0.5
1901 Male, age 80, both hemispheres 0.0
2042 Male, age 76, both hemispheres 0.0
2729 Female, age 91, right hemisphere 0.0

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 142.1
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 142.1
Samples: 197

Max nTPM: 494.6
Min nTPM: 2.0
Std nTPM: 92.0
Median nTPM: 136.7
GTEX-11DXW-0011-R1a-SM-DNZZD 40-49 years, male 494.6
GTEX-1HT8W-0011-R1b-SM-CJI3V 30-39 years, male 419.4
GTEX-1GMR8-0011-R1b-SM-CJI2O 50-59 years, female 404.0
GTEX-13FLW-0011-R1b-SM-5LZX2 50-59 years, male 378.7
GTEX-1F75A-0011-R1b-SM-CE6RA 50-59 years, male 362.0
GTEX-WVLH-0011-R1A-SM-4MVOK 50-59 years, male 351.7
GTEX-13O3Q-0011-R1b-SM-5KM3L 50-59 years, male 345.0
GTEX-145MH-0011-R1b-SM-5PNWY 50-59 years, male 343.4
GTEX-R55E-0011-R1A-SM-2TC6N 20-29 years, male 333.7
GTEX-13PDP-0011-R1a-SM-5PNX5 60-69 years, male 333.2
GTEX-1GZ2Q-0011-R1a-SM-CJI2Y 40-49 years, male 309.5
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 230.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 230.0
FF:10169-103B7 60 years, female 258.4
FF:10153-102I9 76 years, female 201.6

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 80.9
Pig sample Sample description nTPM
Dorsal hippocampus
nTPM: 50.9
Samples: 4

Max nTPM: 60.1
Min nTPM: 39.4
Sample A Female 60.1
Sample B Female 56.0
Sample C Male 48.2
Sample D Male 39.4
Entorhinal cortex
nTPM: 80.9
Samples: 4

Max nTPM: 91.3
Min nTPM: 65.6
Sample A Female 91.3
Sample B Female 65.6
Sample C Male 89.5
Sample D Male 77.1
Subiculum
nTPM: 73.5
Samples: 4

Max nTPM: 95.1
Min nTPM: 61.0
Sample A Female 95.1
Sample B Female 63.3
Sample C Male 74.7
Sample D Male 61.0
Ventral hippocampus
nTPM: 54.9
Samples: 4

Max nTPM: 74.2
Min nTPM: 43.4
Sample A Female 45.9
Sample B Female 43.4
Sample C Male 74.2
Sample D Male 55.9

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 145.3
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 145.3
Samples: 4

Max nTPM: 167.2
Min nTPM: 132.5
Sample A Male 139.4
Sample B Male 141.9
Sample C Female 132.5
Sample D Female 167.2
Hippocampal formation
nTPM: 126.2
Samples: 4

Max nTPM: 134.5
Min nTPM: 115.0
Sample A Male 115.0
Sample B Male 134.5
Sample C Female 130.0
Sample D Female 125.1

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 19.0
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 19.0
74047926 Antisense, RP_051214_02_D11, Mouse strain C57BL/6J (56 days, male) 19.4
68196981 Antisense, RP_040928_01_B02, Mouse strain C57BL/6J (56 days, male) 18.7

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.