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BASAL GANGLIA - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:4.5 nTPM
HPA:4.5 nTPM
GTEx:1.9 nTPM
FANTOM5:0.0 Scaled Tags Per Million
Pig:0.0 nTPM
Mouse:0.0 nTPM
Allen mouse:1.2 Expression energy

BASAL GANGLIA - Annotated protein expression
Pending normal tissue analysis

BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 4.5
Sample id Sample description nTPM
Caudate nucleus
nTPM: 3.0
1854 Male, age 80, left hemisphere 4.8
2290 Female, age 72, unknown 4.1
1857 Female, age 85, left hemisphere 4.0
2289 Male, age 61, right hemisphere 3.9
2288 Male, age 75, left hemisphere 3.2
2846 Female, age 79, unknown 2.9
1781 Male, age 74, unknown 1.6
2481 Female, age 94, left hemisphere 0.0
Claustrum
nTPM: 0.2
2196 Female, age 79, unknown 1.5
2284 Female, age 91, both hemispheres 0.2
2568 Male, age 61, both hemispheres 0.2
2645 Female, age 72, unknown 0.2
2491 Male, age 75, both hemispheres 0.1
1956 Male, age 74, unknown 0.0
2198 Male, age 80, both hemispheres 0.0
2292 Female, age 85, both hemispheres 0.0
2392 Female, age 94, both hemispheres 0.0
Globus pallidus, externus
nTPM: 0.0
1996 Male, age 80, right hemisphere 0.0
2395 Male, age 75, both hemispheres 0.0
2567 Female, age 72, unknown 0.0
2646 Male, age 61, right hemisphere 0.0
2772 Female, age 79, unknown 0.0
Globus pallidus, internus
nTPM: 0.0
1818 Male, age 74, unknown 0.0
2037 Male, age 80, right hemisphere 0.0
2111 Female, age 85, right hemisphere 0.0
2287 Male, age 75, right hemisphere 0.0
2483 Female, age 94, right hemisphere 0.0
2566 Female, age 72, unknown 0.0
2778 Female, age 91, both hemispheres 0.0
Nucleus accumbens
nTPM: 4.5
1856 Female, age 91, right hemisphere 7.1
2824 Male, age 61, right hemisphere 6.2
1783 Male, age 74, unknown 5.9
1806 Female, age 85, left hemisphere 5.7
2698 Female, age 72, unknown 4.3
2732 Male, age 80, right hemisphere 3.5
2286 Male, age 75, left hemisphere 3.2
2391 Female, age 94, left hemisphere 0.0
Nucleus basalis of Meynert
nTPM: 1.7
2393 Male, age 80, right hemisphere 3.8
2484 Female, age 94, left hemisphere 1.9
2821 Male, age 75, both hemispheres 1.4
2569 Male, age 61, both hemispheres 0.0
Nucleus of the diagonal band
nTPM: 0.7
1979 Male, age 74, unknown 1.7
2195 Female, age 85, both hemispheres 0.9
2775 Male, age 80, right hemisphere 0.7
2029 Male, age 61, right hemisphere 0.4
1812 Female, age 91, both hemispheres 0.0
Olfactory tubercle
nTPM: 0.3
2487 Female, age 94, left hemisphere 0.7
1998 Female, age 91, both hemispheres 0.5
1846 Male, age 80, right hemisphere 0.0
2856 Male, age 75, right hemisphere 0.0
Putamen
nTPM: 3.4
1838 Male, age 80, right hemisphere 8.2
2466 Female, age 79, unknown 4.4
1937 Female, age 91, right hemisphere 4.0
2489 Female, age 72, unknown 3.2
1829 Male, age 74, unknown 2.6
2647 Male, age 75, left hemisphere 1.1
2482 Female, age 94, left hemisphere 0.3
Septal nuclei
nTPM: 0.5
2059 Female, age 85, both hemispheres 1.9
1960 Male, age 74, unknown 0.9
2031 Female, age 72, unknown 0.5
2394 Male, age 61, left hemisphere 0.2
2009 Female, age 91, both hemispheres 0.1
2199 Male, age 80, right hemisphere 0.1
2629 Female, age 94, right hemisphere 0.0

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 1.9
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 0.7
Samples: 246

Max nTPM: 3.4
Min nTPM: 0.0
Std nTPM: 0.6
Median nTPM: 0.5
GTEX-18464-0011-R5b-SM-718A6 50-59 years, male 3.4
GTEX-1HB9E-0011-R5b-SM-ARU78 50-59 years, male 3.4
GTEX-13G51-0011-R5a-SM-5L3EB 60-69 years, male 2.6
GTEX-1IY9M-0011-R5a-SM-A9SLX 60-69 years, male 2.5
GTEX-1313W-0011-R5b-SM-5L3EP 50-59 years, female 2.4
GTEX-13O3Q-0011-R5b-SM-5P9H4 50-59 years, male 2.2
GTEX-12WSC-0011-R5b-SM-5CVNS 50-59 years, male 2.1
GTEX-145MH-0011-R5a-SM-5P9JT 50-59 years, male 2.1
GTEX-131YS-0011-R5b-SM-5K7YB 60-69 years, female 2.0
GTEX-WL46-0011-R5A-SM-3LK6V 50-59 years, male 2.0
GTEX-11DXY-0011-R5b-SM-DNZZL 60-69 years, male 2.0
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 1.9
Samples: 246

Max nTPM: 7.9
Min nTPM: 0.0
Std nTPM: 1.6
Median nTPM: 1.5
GTEX-XLM4-0011-R6A-SM-4AT4B 60-69 years, male 7.9
GTEX-13112-0011-R6b-SM-5DUVK 50-59 years, male 7.0
GTEX-1B933-0011-R6b-SM-79OOQ 50-59 years, female 6.9
GTEX-13RTJ-0011-R6a-SM-5SI74 60-69 years, male 6.6
GTEX-144GL-0011-R6a-SM-5P9HW 50-59 years, male 6.3
GTEX-14BMV-0011-R6b-SM-5YY9I 50-59 years, male 6.1
GTEX-1F75W-0011-R6a-SM-9QEI5 60-69 years, male 6.1
GTEX-15CHQ-0011-R6b-SM-69LOX 60-69 years, male 5.8
GTEX-13OW6-0011-R6b-SM-5L3GR 50-59 years, male 5.7
GTEX-1HB9E-0011-R6b-SM-A9G1P 50-59 years, male 5.7
GTEX-1GN73-0011-R6b-SM-CJI2T 60-69 years, male 5.6
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Brain - Putamen (basal ganglia)
Average nTPM: 0.6
Samples: 205

Max nTPM: 3.6
Min nTPM: 0.0
Std nTPM: 0.6
Median nTPM: 0.4
GTEX-13112-0011-R7b-SM-5DUVW 50-59 years, male 3.6
GTEX-15RJE-0011-R7a-SM-7DHL9 40-49 years, male 3.1
GTEX-XLM4-0011-R7A-SM-4AT5L 60-69 years, male 2.9
GTEX-ZUA1-0011-R7b-SM-4YCDP 40-49 years, male 2.7
GTEX-13RTJ-0011-R7b-SM-5P9JS 60-69 years, male 2.4
GTEX-131YS-0011-R7a-SM-5IJDA 60-69 years, female 2.2
GTEX-1LH75-0011-R7a-SM-EXOIF 50-59 years, female 2.2
GTEX-12WSD-0011-R7b-SM-5PNWE 60-69 years, female 2.1
GTEX-14C5O-0011-R7b-SM-5YYAH 60-69 years, male 2.0
GTEX-1B933-0011-R7a-SM-7DUGX 50-59 years, female 1.9
GTEX-T6MN-0011-R7A-SM-32QP5 50-59 years, male 1.9
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 0
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 0.0
FF:10164-103B2 76 years, female 0.0
Globus pallidus
Scaled Tags Per Million: 0.0
FF:10175-103C4 60 years, female 0.0
FF:10161-103A8 76 years, female 0.0
Nucleus accumbens
Scaled Tags Per Million: 0.0
FF:10037-101F1 23-56 years, mixed 0.0
Putamen
Scaled Tags Per Million: 0.0
FF:10176-103C5 60 years, female 0.0

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 0.0
Pig sample Sample description nTPM
Caudate
nTPM: 0.0
Samples: 4

Max nTPM: 0.1
Min nTPM: 0.0
Sample A Female 0.0
Sample B Female 0.1
Sample C Male 0.0
Sample D Male 0.0
Putamen
nTPM: 0.0
Samples: 4

Max nTPM: 0.0
Min nTPM: 0.0
Sample A Female 0.0
Sample B Female 0.0
Sample C Male 0.0
Sample D Male 0.0
Septum
nTPM: 0.0
Samples: 4

Max nTPM: 0.0
Min nTPM: 0.0
Sample A Female 0.0
Sample B Female 0.0
Sample C Male 0.0
Sample D Male 0.0
Ventral pallidum
nTPM: 0.0
Samples: 4

Max nTPM: 0.1
Min nTPM: 0.0
Sample A Female 0.1
Sample B Female 0.0
Sample C Male 0.0
Sample D Male 0.0

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 0.0
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 0.0
Samples: 4

Max nTPM: 0.0
Min nTPM: 0.0
Sample A Male 0.0
Sample B Male 0.0
Sample C Female 0.0
Sample D Female 0.0
Septum
nTPM: 0.0
Samples: 4

Max nTPM: 0.0
Min nTPM: 0.0
Sample A Male 0.0
Sample B Male 0.0
Sample C Female 0.0
Sample D Female 0.0
Ventral forebrain
nTPM: 0.0
Samples: 4

Max nTPM: 0.0
Min nTPM: 0.0
Sample A Male 0.0
Sample B Male 0.0
Sample C Female 0.0
Sample D Female 0.0

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 1.2
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 1.2
2722 Antisense, RP_040526_02_B05, Mouse strain C57BL/6J (56 days, male) 2.3
112644522 Antisense, RP_110407_01_F07, Mouse strain C57BL/6J (56 days, male) 0.0
Pallidum
Expression energy: 1.1
2722 Antisense, RP_040526_02_B05, Mouse strain C57BL/6J (56 days, male) 2.2
112644522 Antisense, RP_110407_01_F07, Mouse strain C57BL/6J (56 days, male) 0.0

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The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.