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BASAL GANGLIA - Expression summary
Protein expression
Caudatei
h
m
l
n
Glial cells: Low
Neuronal cells: Low
RNA expressioni
Consensus:63.2 nTPM
HPA:63.2 nTPM
GTEx:43.9 nTPM
FANTOM5:128.7 Scaled Tags Per Million
Pig:174.2 nTPM
Mouse:51.0 nTPM
Allen mouse:5.1 Expression energy

CAUDATE - Antibody stainingi
Antibody HPA003474Antibody CAB000328
Glial cells Not detectedLow
Neuronal cells Not detectedLow





BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 63.2
Sample id Sample description nTPM
Caudate nucleus
nTPM: 53.1
2288 Male, age 75, left hemisphere 58.5
2481 Female, age 94, left hemisphere 55.7
2846 Female, age 79, unknown 54.2
2290 Female, age 72, unknown 52.5
1781 Male, age 74, unknown 51.8
1854 Male, age 80, left hemisphere 51.5
2289 Male, age 61, right hemisphere 50.3
1857 Female, age 85, left hemisphere 50.2
Claustrum
nTPM: 53.1
2292 Female, age 85, both hemispheres 56.6
2196 Female, age 79, unknown 55.3
2392 Female, age 94, both hemispheres 53.5
2284 Female, age 91, both hemispheres 53.0
1956 Male, age 74, unknown 52.7
2645 Female, age 72, unknown 52.7
2491 Male, age 75, both hemispheres 52.1
2568 Male, age 61, both hemispheres 51.0
2198 Male, age 80, both hemispheres 50.9
Globus pallidus, externus
nTPM: 59.3
1996 Male, age 80, right hemisphere 63.9
2567 Female, age 72, unknown 59.4
2646 Male, age 61, right hemisphere 58.6
2772 Female, age 79, unknown 57.4
2395 Male, age 75, both hemispheres 57.1
Globus pallidus, internus
nTPM: 63.2
2111 Female, age 85, right hemisphere 65.2
2287 Male, age 75, right hemisphere 64.1
1818 Male, age 74, unknown 63.1
2778 Female, age 91, both hemispheres 63.0
2483 Female, age 94, right hemisphere 62.9
2037 Male, age 80, right hemisphere 62.0
2566 Female, age 72, unknown 61.8
Nucleus accumbens
nTPM: 53.2
2391 Female, age 94, left hemisphere 58.6
2698 Female, age 72, unknown 57.3
2286 Male, age 75, left hemisphere 55.1
1783 Male, age 74, unknown 53.6
2732 Male, age 80, right hemisphere 52.9
1806 Female, age 85, left hemisphere 49.8
1856 Female, age 91, right hemisphere 49.4
2824 Male, age 61, right hemisphere 48.7
Nucleus basalis of Meynert
nTPM: 55.2
2569 Male, age 61, both hemispheres 59.7
2821 Male, age 75, both hemispheres 55.9
2393 Male, age 80, right hemisphere 53.7
2484 Female, age 94, left hemisphere 51.3
Nucleus of the diagonal band
nTPM: 50.2
2195 Female, age 85, both hemispheres 52.1
1979 Male, age 74, unknown 50.3
1812 Female, age 91, both hemispheres 49.8
2029 Male, age 61, right hemisphere 49.4
2775 Male, age 80, right hemisphere 49.1
Olfactory tubercle
nTPM: 51.5
2856 Male, age 75, right hemisphere 53.8
1846 Male, age 80, right hemisphere 51.4
1998 Female, age 91, both hemispheres 50.8
2487 Female, age 94, left hemisphere 50.1
Putamen
nTPM: 53.2
1829 Male, age 74, unknown 56.7
2482 Female, age 94, left hemisphere 55.6
2489 Female, age 72, unknown 53.8
2647 Male, age 75, left hemisphere 52.5
2466 Female, age 79, unknown 52.4
1937 Female, age 91, right hemisphere 51.8
1838 Male, age 80, right hemisphere 49.6
Septal nuclei
nTPM: 51.7
2629 Female, age 94, right hemisphere 56.3
2199 Male, age 80, right hemisphere 53.7
2394 Male, age 61, left hemisphere 53.1
1960 Male, age 74, unknown 50.6
2059 Female, age 85, both hemispheres 50.4
2009 Female, age 91, both hemispheres 49.8
2031 Female, age 72, unknown 48.0

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 43.9
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 41.2
Samples: 246

Max nTPM: 72.8
Min nTPM: 22.9
Std nTPM: 7.8
Median nTPM: 40.2
GTEX-12WSH-0011-R5b-SM-5P9F3 50-59 years, male 72.8
GTEX-1E1VI-0011-R5b-SM-9WG5V 50-59 years, male 68.5
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 66.9
GTEX-X4XX-0011-R5A-SM-46MWN 60-69 years, male 66.2
GTEX-1HR9M-0011-R5a-SM-ARU72 60-69 years, male 63.9
GTEX-11UD1-0011-R5b-SM-5P9FP 40-49 years, female 61.0
GTEX-1HBPH-0011-R5b-SM-A9G1R 40-49 years, female 59.7
GTEX-145MG-0011-R5b-SM-5S2VU 50-59 years, male 56.3
GTEX-1C6VS-0011-R5a-SM-7MXU9 60-69 years, male 56.1
GTEX-14LZ3-0011-R5b-SM-5ZZV8 60-69 years, female 55.9
GTEX-13PL6-0011-R5b-SM-5O9BI 40-49 years, female 55.4
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 39.7
Samples: 246

Max nTPM: 71.2
Min nTPM: 20.9
Std nTPM: 7.5
Median nTPM: 38.7
GTEX-13IVO-0011-R6b-SM-5K7X9 70-79 years, male 71.2
GTEX-13PDP-0011-R6b-SM-5O9D5 60-69 years, male 67.6
GTEX-1IGQW-0011-R6a-SM-CM2TC 60-69 years, male 62.0
GTEX-145MI-0011-R6a-SM-5PNZA 60-69 years, female 60.8
GTEX-ZV68-0011-R6a-SM-51MSR 50-59 years, female 59.6
GTEX-X4XY-0011-R6B-SM-46MVB 60-69 years, male 58.8
GTEX-ZF28-0011-R6a-SM-4WKHI 60-69 years, male 58.7
GTEX-1F88E-0011-R6a-SM-CKZNW 60-69 years, female 58.6
GTEX-ZUA1-0011-R6b-SM-4YCDD 40-49 years, male 58.1
GTEX-1I1HK-0011-R6b-SM-CM2T9 60-69 years, male 56.0
GTEX-144GO-0011-R6b-SM-5S2V7 60-69 years, male 55.7
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Brain - Putamen (basal ganglia)
Average nTPM: 43.9
Samples: 205

Max nTPM: 89.4
Min nTPM: 23.2
Std nTPM: 9.1
Median nTPM: 42.2
GTEX-144GO-0011-R7b-SM-5S2TT 60-69 years, male 89.4
GTEX-ZE7O-0011-R7a-SM-57WCU 50-59 years, female 72.8
GTEX-ZVZQ-0011-R7b-SM-57WBB 60-69 years, female 70.6
GTEX-14LZ3-0011-R7a-SM-69LQN 60-69 years, female 65.9
GTEX-1I1CD-0011-R7a-SM-CMKHA 60-69 years, female 64.5
GTEX-13CF2-0011-R7b-SM-5K7UV 60-69 years, male 64.1
GTEX-NL3H-0011-R7a-SM-2I3G5 60-69 years, male 63.2
GTEX-1E2YA-0011-R7a-SM-CJI1Z 50-59 years, male 63.1
GTEX-ZXG5-0011-R7b-SM-57WCC 60-69 years, male 62.9
GTEX-1E1VI-0011-R7b-SM-9QEGR 50-59 years, male 62.4
GTEX-1LVA9-0011-R7a-SM-EYYWG 50-59 years, male 62.3
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 128.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 128.7
FF:10164-103B2 76 years, female 128.7
Globus pallidus
Scaled Tags Per Million: 115.0
FF:10161-103A8 76 years, female 175.6
FF:10175-103C4 60 years, female 54.4
Nucleus accumbens
Scaled Tags Per Million: 120.7
FF:10037-101F1 23-56 years, mixed 120.7
Putamen
Scaled Tags Per Million: 113.5
FF:10176-103C5 60 years, female 113.5

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 174.2
Pig sample Sample description nTPM
Caudate
nTPM: 133.6
Samples: 4

Max nTPM: 150.8
Min nTPM: 122.7
Sample A Female 127.8
Sample B Female 133.1
Sample C Male 150.8
Sample D Male 122.7
Putamen
nTPM: 174.2
Samples: 4

Max nTPM: 193.3
Min nTPM: 137.6
Sample A Female 193.3
Sample B Female 137.6
Sample C Male 183.5
Sample D Male 182.4
Septum
nTPM: 137.4
Samples: 4

Max nTPM: 149.0
Min nTPM: 126.0
Sample A Female 140.4
Sample B Female 126.0
Sample C Male 134.2
Sample D Male 149.0
Ventral pallidum
nTPM: 139.7
Samples: 4

Max nTPM: 150.2
Min nTPM: 114.8
Sample A Female 114.8
Sample B Female 146.8
Sample C Male 146.8
Sample D Male 150.2

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 51.0
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 44.0
Samples: 4

Max nTPM: 45.2
Min nTPM: 42.1
Sample A Male 42.1
Sample B Male 44.4
Sample C Female 44.4
Sample D Female 45.2
Septum
nTPM: 51.0
Samples: 4

Max nTPM: 56.4
Min nTPM: 47.1
Sample A Male 47.1
Sample B Male 56.4
Sample C Female 48.0
Sample D Female 52.5
Ventral forebrain
nTPM: 43.7
Samples: 4

Max nTPM: 44.9
Min nTPM: 42.6
Sample A Male 43.1
Sample B Male 44.3
Sample C Female 44.9
Sample D Female 42.6

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 5.1
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 5.1
69289333 Antisense, RP_050407_03_A03, Mouse strain C57BL/6J (56 days, male) 5.1
Pallidum
Expression energy: 3.7
69289333 Antisense, RP_050407_03_A03, Mouse strain C57BL/6J (56 days, male) 3.7

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.