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MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:56.0 nTPM
HPA:56.0 nTPM
GTEx:76.3 nTPM
FANTOM5:35.6 Scaled Tags Per Million
Pig:15.5 nTPM
Mouse:13.2 nTPM
Allen mouse:0.5 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 56.0
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 46.5
2586 Male, age 75, left hemisphere 54.0
2019 Male, age 18, unknown 52.6
2828 Female, age 72, unknown 50.9
1870 Female, age 42, unknown 49.4
1830 Male, age 51, unknown 46.6
2666 Male, age 74, left hemisphere 46.5
2411 Female, age 72, unknown 44.8
1833 Male, age 53, unknown 43.2
1827 Male, age 72, unknown 42.0
2219 Male, age 76, both hemispheres 35.1
Dorsal raphe nucleus
nTPM: 47.1
2016 Female, age 72, unknown 52.4
1828 Male, age 53, unknown 48.8
2298 Female, age 72, unknown 48.0
2750 Male, age 76, both hemispheres 45.0
2047 Male, age 72, unknown 41.2
Inferior colliculus
nTPM: 47.0
1890 Male, age 53, unknown 50.3
2097 Female, age 72, unknown 49.1
1848 Female, age 42, unknown 48.3
2849 Male, age 72, unknown 40.1
Median raphe nucleus
nTPM: 37.9
2220 Male, age 76, midline 37.9
Pedunculopontine tegmental nucleus
nTPM: 53.3
2338 Male, age 61, both hemispheres 64.4
2334 Male, age 80, both hemispheres 56.3
1921 Female, age 85, both hemispheres 39.1
Periaquaductal grey, anterior
nTPM: 54.3
1795 Male, age 51, unknown 60.8
2502 Female, age 75, unknown 54.0
1947 Male, age 18, unknown 48.2
Periaquaductal grey, dorsal
nTPM: 51.2
2850 Male, age 76, both hemispheres 62.8
1831 Male, age 72, unknown 55.6
2464 Female, age 72, unknown 44.1
1840 Male, age 53, unknown 42.3
Periaquaductal grey, lateral
nTPM: 56.0
2140 Male, age 76, both hemispheres 64.4
2272 Male, age 74, both hemispheres 54.7
2053 Male, age 18, unknown 48.9
Pretectal area
nTPM: 44.9
1817 Female, age 42, unknown 49.7
2667 Female, age 75, unknown 48.5
2273 Male, age 74, both hemispheres 48.0
2316 Male, age 76, right hemisphere 47.3
2224 Female, age 72, unknown 47.1
2007 Male, age 72, unknown 46.2
1815 Male, age 53, unknown 44.0
1944 Female, age 72, unknown 43.8
2825 Male, age 18, unknown 43.7
1816 Male, age 51, unknown 39.9
2407 Male, age 75, both hemispheres 35.2
Red nucleus
nTPM: 53.6
1954 Female, age 42, unknown 62.8
2769 Male, age 72, unknown 59.1
2227 Male, age 72, unknown 58.7
2785 Male, age 18, unknown 56.9
2588 Male, age 74, left hemisphere 54.0
1865 Male, age 51, unknown 52.3
1904 Male, age 53, unknown 52.2
2503 Female, age 72, unknown 52.1
1821 Female, age 72, unknown 51.7
2823 Male, age 76, right hemisphere 49.8
2725 Female, age 75, unknown 48.6
2584 Male, age 75, left hemisphere 44.6
Substantia nigra
nTPM: 41.3
2665 Male, age 74, both hemispheres 50.3
1851 Male, age 51, unknown 44.9
1889 Female, age 72, unknown 42.4
1941 Male, age 53, unknown 41.1
1916 Female, age 42, unknown 41.0
2699 Male, age 18, unknown 40.6
2590 Female, age 75, unknown 40.3
2241 Male, age 72, unknown 38.6
2583 Male, age 75, right hemisphere 37.2
2409 Female, age 72, unknown 36.3
Superior colliculus
nTPM: 45.0
1995 Male, age 72, unknown 51.9
2261 Male, age 18, unknown 47.3
1913 Female, age 42, unknown 46.7
2087 Female, age 72, unknown 46.5
1796 Male, age 53, unknown 45.4
2668 Female, age 75, unknown 45.3
2587 Male, age 74, left hemisphere 45.2
1839 Male, age 51, unknown 41.4
1895 Male, age 76, right hemisphere 41.1
2664 Male, age 75, both hemispheres 39.0
Ventral tegmental area
nTPM: 45.6
2021 Male, age 53, unknown 51.6
2223 Female, age 72, unknown 46.1
1942 Male, age 51, unknown 45.3
2218 Male, age 76, both hemispheres 44.6
1915 Female, age 42, unknown 43.6
2410 Female, age 72, unknown 42.4

MIDBRAIN - GTEx RNA-seqi
Average nTPM 76.3
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 76.3
Samples: 139

Max nTPM: 248.7
Min nTPM: 4.5
Std nTPM: 43.0
Median nTPM: 62.4
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 248.7
GTEX-1H23P-0011-R2a-SM-CKZP3 60-69 years, male 230.1
GTEX-1IL2U-0011-R2a-SM-ARU6V 60-69 years, male 226.9
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 184.3
GTEX-139TS-0011-R2b-SM-5J1MX 60-69 years, male 169.7
GTEX-13OW8-0011-R2a-SM-5L3G2 60-69 years, male 167.4
GTEX-12WSD-0011-R2a-SM-5LZWB 60-69 years, female 166.0
GTEX-ZDXO-0011-R2b-SM-4WKFG 60-69 years, male 154.9
GTEX-YJ89-0011-R2b-SM-4RGLT 60-69 years, male 153.1
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 150.2
GTEX-13X6K-0011-R2b-SM-5P9K3 60-69 years, female 148.9
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 35.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 35.6
FF:10158-103A5 76 years, female 35.6

MIDBRAIN - Pig RNA-seqi
Average nTPM 15.5
Pig sample Sample description nTPM
Midbrain
nTPM: 6.6
Samples: 4

Max nTPM: 12.1
Min nTPM: 4.3
Sample A Female 12.1
Sample B Female 4.3
Sample C Male 5.6
Sample D Male 4.5
Periaqueductal gray
nTPM: 5.7
Samples: 3

Max nTPM: 6.2
Min nTPM: 5.2
Sample B Female 5.2
Sample C Male 6.2
Sample D Male 5.6
Substantia nigra
nTPM: 9.6
Samples: 4

Max nTPM: 12.6
Min nTPM: 4.5
Sample A Female 8.8
Sample B Female 12.3
Sample C Male 4.5
Sample D Male 12.6
Superior colliculi
nTPM: 15.5
Samples: 4

Max nTPM: 33.8
Min nTPM: 5.8
Sample A Female 15.0
Sample B Female 33.8
Sample C Male 5.8
Sample D Male 7.5

MIDBRAIN - Mouse RNA-seqi
Average nTPM 13.2
Mouse sample Sample description nTPM
Midbrain
nTPM: 13.2
Samples: 4

Max nTPM: 14.9
Min nTPM: 10.2
Sample A Male 14.4
Sample B Male 10.2
Sample C Female 14.9
Sample D Female 13.2

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.5
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.5
71608229 Antisense, RP_050927_01_D01, Mouse strain C57BL/6J (56 days, male) 0.5

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The Human Protein Atlas

The Human Protein Atlas project is funded
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