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MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:81.9 nTPM
HPA:81.9 nTPM
GTEx:86.4 nTPM
FANTOM5:94.8 Scaled Tags Per Million
Pig:25.5 nTPM
Mouse:94.0 nTPM
Allen mouse:7.0 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 81.9
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 75.5
2019 Male, age 18, unknown 85.5
2411 Female, age 72, unknown 78.9
2828 Female, age 72, unknown 78.6
2586 Male, age 75, left hemisphere 77.4
1870 Female, age 42, unknown 76.2
1830 Male, age 51, unknown 74.4
1833 Male, age 53, unknown 72.6
1827 Male, age 72, unknown 71.2
2666 Male, age 74, left hemisphere 70.0
2219 Male, age 76, both hemispheres 69.8
Dorsal raphe nucleus
nTPM: 70.5
2750 Male, age 76, both hemispheres 80.2
1828 Male, age 53, unknown 70.2
2298 Female, age 72, unknown 67.9
2016 Female, age 72, unknown 67.1
2047 Male, age 72, unknown 67.1
Inferior colliculus
nTPM: 68.2
1890 Male, age 53, unknown 72.7
2097 Female, age 72, unknown 68.6
1848 Female, age 42, unknown 68.1
2849 Male, age 72, unknown 63.4
Median raphe nucleus
nTPM: 70.0
2220 Male, age 76, midline 70.0
Pedunculopontine tegmental nucleus
nTPM: 72.7
2334 Male, age 80, both hemispheres 76.9
2338 Male, age 61, both hemispheres 74.9
1921 Female, age 85, both hemispheres 66.3
Periaquaductal grey, anterior
nTPM: 69.9
2502 Female, age 75, unknown 71.0
1947 Male, age 18, unknown 69.8
1795 Male, age 51, unknown 69.0
Periaquaductal grey, dorsal
nTPM: 65.5
1831 Male, age 72, unknown 71.4
2464 Female, age 72, unknown 66.4
2850 Male, age 76, both hemispheres 62.8
1840 Male, age 53, unknown 61.3
Periaquaductal grey, lateral
nTPM: 66.9
2272 Male, age 74, both hemispheres 72.8
2053 Male, age 18, unknown 65.7
2140 Male, age 76, both hemispheres 62.1
Pretectal area
nTPM: 72.7
2007 Male, age 72, unknown 78.9
1817 Female, age 42, unknown 78.3
1815 Male, age 53, unknown 77.0
1816 Male, age 51, unknown 74.4
1944 Female, age 72, unknown 74.4
2316 Male, age 76, right hemisphere 72.8
2667 Female, age 75, unknown 72.8
2273 Male, age 74, both hemispheres 71.8
2407 Male, age 75, both hemispheres 67.6
2224 Female, age 72, unknown 66.2
2825 Male, age 18, unknown 65.0
Red nucleus
nTPM: 81.9
1904 Male, age 53, unknown 86.8
2503 Female, age 72, unknown 86.1
2785 Male, age 18, unknown 85.6
1865 Male, age 51, unknown 84.7
2823 Male, age 76, right hemisphere 84.6
1821 Female, age 72, unknown 83.8
2769 Male, age 72, unknown 82.6
2227 Male, age 72, unknown 82.1
2725 Female, age 75, unknown 78.5
1954 Female, age 42, unknown 77.9
2588 Male, age 74, left hemisphere 76.8
2584 Male, age 75, left hemisphere 73.3
Substantia nigra
nTPM: 72.6
1851 Male, age 51, unknown 76.8
1916 Female, age 42, unknown 76.0
2583 Male, age 75, right hemisphere 75.9
2665 Male, age 74, both hemispheres 74.8
1889 Female, age 72, unknown 74.2
2699 Male, age 18, unknown 72.2
1941 Male, age 53, unknown 71.9
2590 Female, age 75, unknown 70.8
2409 Female, age 72, unknown 67.6
2241 Male, age 72, unknown 65.8
Superior colliculus
nTPM: 74.0
1913 Female, age 42, unknown 84.4
1995 Male, age 72, unknown 80.7
2668 Female, age 75, unknown 76.8
2587 Male, age 74, left hemisphere 76.0
2087 Female, age 72, unknown 73.6
2261 Male, age 18, unknown 71.7
1796 Male, age 53, unknown 71.3
1895 Male, age 76, right hemisphere 70.7
1839 Male, age 51, unknown 69.3
2664 Male, age 75, both hemispheres 65.8
Ventral tegmental area
nTPM: 73.2
2223 Female, age 72, unknown 78.2
2410 Female, age 72, unknown 75.9
1915 Female, age 42, unknown 72.7
2218 Male, age 76, both hemispheres 71.2
1942 Male, age 51, unknown 70.9
2021 Male, age 53, unknown 70.6

MIDBRAIN - GTEx RNA-seqi
Average nTPM 86.4
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 86.4
Samples: 139

Max nTPM: 181.4
Min nTPM: 48.7
Std nTPM: 18.0
Median nTPM: 82.5
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 181.4
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 149.8
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 135.3
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 133.4
GTEX-OXRO-0011-R2A-SM-3NB1W 60-69 years, female 127.6
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 124.1
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 123.1
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 121.9
GTEX-12WSH-0011-R2a-SM-5GU68 50-59 years, male 115.1
GTEX-139TS-0011-R2b-SM-5J1MX 60-69 years, male 113.9
GTEX-1HSMO-0011-R2a-SM-CL553 60-69 years, male 111.4
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 94.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 94.8
FF:10158-103A5 76 years, female 94.8

MIDBRAIN - Pig RNA-seqi
Average nTPM 25.5
Pig sample Sample description nTPM
Midbrain
nTPM: 25.4
Samples: 4

Max nTPM: 36.5
Min nTPM: 21.2
Sample A Female 36.5
Sample B Female 22.0
Sample C Male 21.8
Sample D Male 21.2
Periaqueductal gray
nTPM: 20.2
Samples: 3

Max nTPM: 22.6
Min nTPM: 17.6
Sample B Female 20.3
Sample C Male 22.6
Sample D Male 17.6
Substantia nigra
nTPM: 24.7
Samples: 4

Max nTPM: 28.5
Min nTPM: 22.0
Sample A Female 28.5
Sample B Female 22.4
Sample C Male 25.7
Sample D Male 22.0
Superior colliculi
nTPM: 25.5
Samples: 4

Max nTPM: 29.7
Min nTPM: 22.8
Sample A Female 29.7
Sample B Female 25.6
Sample C Male 23.7
Sample D Male 22.8

MIDBRAIN - Mouse RNA-seqi
Average nTPM 94.0
Mouse sample Sample description nTPM
Midbrain
nTPM: 94.0
Samples: 4

Max nTPM: 97.6
Min nTPM: 90.7
Sample A Male 96.3
Sample B Male 91.3
Sample C Female 90.7
Sample D Female 97.6

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 7.0
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 7.0
67978479 Antisense, RP_040923_01_C04, Mouse strain C57BL/6J (56 days, male) 7.0

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The Human Protein Atlas

The Human Protein Atlas project is funded
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