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COX6B1
MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:740.1 nTPM
HPA:740.1 nTPM
GTEx:356.6 nTPM
FANTOM5:214.9 Scaled Tags Per Million
Pig:139.8 nTPM
Mouse:790.7 nTPM
Allen mouse:10.6 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 740.1
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 712.6
1827 Male, age 72, unknown 732.2
2019 Male, age 18, unknown 723.7
2411 Female, age 72, unknown 720.3
1833 Male, age 53, unknown 713.3
2219 Male, age 76, both hemispheres 712.4
2828 Female, age 72, unknown 711.8
1870 Female, age 42, unknown 709.5
1830 Male, age 51, unknown 703.8
2666 Male, age 74, left hemisphere 701.3
2586 Male, age 75, left hemisphere 697.3
Dorsal raphe nucleus
nTPM: 721.1
2298 Female, age 72, unknown 733.0
1828 Male, age 53, unknown 729.8
2047 Male, age 72, unknown 728.3
2750 Male, age 76, both hemispheres 714.1
2016 Female, age 72, unknown 700.4
Inferior colliculus
nTPM: 726.4
2097 Female, age 72, unknown 733.2
1890 Male, age 53, unknown 727.6
1848 Female, age 42, unknown 726.4
2849 Male, age 72, unknown 718.4
Median raphe nucleus
nTPM: 719.9
2220 Male, age 76, midline 719.9
Pedunculopontine tegmental nucleus
nTPM: 740.1
2334 Male, age 80, both hemispheres 742.7
1921 Female, age 85, both hemispheres 740.3
2338 Male, age 61, both hemispheres 737.4
Periaquaductal grey, anterior
nTPM: 719.5
1947 Male, age 18, unknown 732.5
1795 Male, age 51, unknown 721.4
2502 Female, age 75, unknown 704.4
Periaquaductal grey, dorsal
nTPM: 706.0
2850 Male, age 76, both hemispheres 722.4
1840 Male, age 53, unknown 708.2
1831 Male, age 72, unknown 701.6
2464 Female, age 72, unknown 691.9
Periaquaductal grey, lateral
nTPM: 718.0
2272 Male, age 74, both hemispheres 743.2
2053 Male, age 18, unknown 710.9
2140 Male, age 76, both hemispheres 699.9
Pretectal area
nTPM: 735.2
1817 Female, age 42, unknown 764.2
1944 Female, age 72, unknown 758.3
2007 Male, age 72, unknown 758.0
2667 Female, age 75, unknown 750.9
1816 Male, age 51, unknown 747.8
2224 Female, age 72, unknown 736.1
1815 Male, age 53, unknown 733.8
2273 Male, age 74, both hemispheres 733.0
2825 Male, age 18, unknown 709.6
2407 Male, age 75, both hemispheres 703.3
2316 Male, age 76, right hemisphere 692.5
Red nucleus
nTPM: 723.1
1821 Female, age 72, unknown 753.9
2725 Female, age 75, unknown 740.0
1954 Female, age 42, unknown 728.8
2503 Female, age 72, unknown 728.3
1865 Male, age 51, unknown 726.6
2769 Male, age 72, unknown 723.1
2785 Male, age 18, unknown 722.3
2823 Male, age 76, right hemisphere 721.5
2227 Male, age 72, unknown 719.5
1904 Male, age 53, unknown 714.2
2584 Male, age 75, left hemisphere 701.2
2588 Male, age 74, left hemisphere 698.3
Substantia nigra
nTPM: 731.7
1889 Female, age 72, unknown 765.5
1916 Female, age 42, unknown 765.2
1941 Male, age 53, unknown 747.4
1851 Male, age 51, unknown 739.1
2699 Male, age 18, unknown 737.3
2409 Female, age 72, unknown 724.4
2665 Male, age 74, both hemispheres 715.5
2241 Male, age 72, unknown 714.5
2590 Female, age 75, unknown 709.1
2583 Male, age 75, right hemisphere 698.7
Superior colliculus
nTPM: 717.3
2087 Female, age 72, unknown 733.1
1895 Male, age 76, right hemisphere 731.4
1796 Male, age 53, unknown 729.0
2587 Male, age 74, left hemisphere 727.5
2668 Female, age 75, unknown 721.7
2261 Male, age 18, unknown 714.6
1913 Female, age 42, unknown 711.6
1839 Male, age 51, unknown 709.4
1995 Male, age 72, unknown 699.8
2664 Male, age 75, both hemispheres 694.6
Ventral tegmental area
nTPM: 725.2
2218 Male, age 76, both hemispheres 745.0
2410 Female, age 72, unknown 744.5
1915 Female, age 42, unknown 739.4
2223 Female, age 72, unknown 716.4
1942 Male, age 51, unknown 713.2
2021 Male, age 53, unknown 692.9

MIDBRAIN - GTEx RNA-seqi
Average nTPM 356.6
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 356.6
Samples: 139

Max nTPM: 673.9
Min nTPM: 194.8
Std nTPM: 91.0
Median nTPM: 341.3
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 673.9
GTEX-1MA7X-0011-R2b-SM-EZ6MT 60-69 years, male 658.0
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 622.2
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 616.1
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 587.2
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 572.6
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 551.1
GTEX-1E1VI-0011-R2a-SM-9QEGS 50-59 years, male 522.0
GTEX-1A8G7-0011-R2a-SM-7IGQI 60-69 years, male 508.5
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 505.0
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 495.8
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 214.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 214.9
FF:10158-103A5 76 years, female 214.9

MIDBRAIN - Pig RNA-seqi
Average nTPM 139.8
Pig sample Sample description nTPM
Midbrain
nTPM: 123.2
Samples: 4

Max nTPM: 159.0
Min nTPM: 107.4
Sample A Female 113.2
Sample B Female 107.4
Sample C Male 159.0
Sample D Male 113.3
Periaqueductal gray
nTPM: 92.2
Samples: 3

Max nTPM: 106.6
Min nTPM: 77.5
Sample B Female 92.6
Sample C Male 106.6
Sample D Male 77.5
Substantia nigra
nTPM: 106.6
Samples: 4

Max nTPM: 141.4
Min nTPM: 77.1
Sample A Female 141.4
Sample B Female 86.9
Sample C Male 121.0
Sample D Male 77.1
Superior colliculi
nTPM: 139.8
Samples: 4

Max nTPM: 181.9
Min nTPM: 101.9
Sample A Female 157.3
Sample B Female 101.9
Sample C Male 181.9
Sample D Male 118.1

MIDBRAIN - Mouse RNA-seqi
Average nTPM 790.7
Mouse sample Sample description nTPM
Midbrain
nTPM: 790.7
Samples: 4

Max nTPM: 844.4
Min nTPM: 742.6
Sample A Male 844.4
Sample B Male 778.9
Sample C Female 742.6
Sample D Female 796.8

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 10.6
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 10.6
71724561 Antisense, RP_050927_04_H10, Mouse strain C57BL/6J (56 days, male) 10.6

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.