ABOUTMENU
HELP
NEWS
HNRNPH2
MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:55.5 nTPM
HPA:55.5 nTPM
GTEx:52.5 nTPM
FANTOM5:137.2 Scaled Tags Per Million
Pig:30.0 nTPM
Mouse:93.2 nTPM
Allen mouse:0.4 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 55.5
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 51.1
1870 Female, age 42, unknown 55.1
1827 Male, age 72, unknown 54.7
2411 Female, age 72, unknown 52.5
1833 Male, age 53, unknown 51.6
2828 Female, age 72, unknown 51.5
2019 Male, age 18, unknown 51.3
1830 Male, age 51, unknown 49.9
2219 Male, age 76, both hemispheres 49.3
2666 Male, age 74, left hemisphere 48.4
2586 Male, age 75, left hemisphere 47.1
Dorsal raphe nucleus
nTPM: 52.3
2298 Female, age 72, unknown 55.6
2750 Male, age 76, both hemispheres 51.8
2016 Female, age 72, unknown 51.7
1828 Male, age 53, unknown 51.4
2047 Male, age 72, unknown 50.8
Inferior colliculus
nTPM: 53.8
2097 Female, age 72, unknown 56.1
2849 Male, age 72, unknown 54.2
1848 Female, age 42, unknown 52.6
1890 Male, age 53, unknown 52.2
Median raphe nucleus
nTPM: 55.5
2220 Male, age 76, midline 55.5
Pedunculopontine tegmental nucleus
nTPM: 54.6
2338 Male, age 61, both hemispheres 57.6
2334 Male, age 80, both hemispheres 54.4
1921 Female, age 85, both hemispheres 51.7
Periaquaductal grey, anterior
nTPM: 52.1
1947 Male, age 18, unknown 52.9
2502 Female, age 75, unknown 52.4
1795 Male, age 51, unknown 51.1
Periaquaductal grey, dorsal
nTPM: 53.7
2850 Male, age 76, both hemispheres 56.7
1840 Male, age 53, unknown 54.0
1831 Male, age 72, unknown 52.3
2464 Female, age 72, unknown 52.0
Periaquaductal grey, lateral
nTPM: 54.1
2272 Male, age 74, both hemispheres 55.9
2140 Male, age 76, both hemispheres 53.7
2053 Male, age 18, unknown 52.6
Pretectal area
nTPM: 55.4
1816 Male, age 51, unknown 60.0
2273 Male, age 74, both hemispheres 58.6
1817 Female, age 42, unknown 56.8
1815 Male, age 53, unknown 56.4
1944 Female, age 72, unknown 56.0
2007 Male, age 72, unknown 55.7
2667 Female, age 75, unknown 54.8
2825 Male, age 18, unknown 53.6
2224 Female, age 72, unknown 53.4
2407 Male, age 75, both hemispheres 52.5
2316 Male, age 76, right hemisphere 51.5
Red nucleus
nTPM: 51.4
1821 Female, age 72, unknown 54.6
1954 Female, age 42, unknown 52.8
2725 Female, age 75, unknown 52.8
2823 Male, age 76, right hemisphere 52.6
2785 Male, age 18, unknown 51.9
1865 Male, age 51, unknown 51.6
1904 Male, age 53, unknown 51.4
2503 Female, age 72, unknown 50.7
2227 Male, age 72, unknown 50.4
2769 Male, age 72, unknown 50.2
2584 Male, age 75, left hemisphere 49.4
2588 Male, age 74, left hemisphere 48.2
Substantia nigra
nTPM: 53.6
2241 Male, age 72, unknown 56.3
1916 Female, age 42, unknown 55.0
1941 Male, age 53, unknown 55.0
1889 Female, age 72, unknown 54.6
2409 Female, age 72, unknown 53.6
1851 Male, age 51, unknown 53.1
2699 Male, age 18, unknown 53.1
2590 Female, age 75, unknown 52.9
2665 Male, age 74, both hemispheres 52.3
2583 Male, age 75, right hemisphere 50.0
Superior colliculus
nTPM: 52.6
2087 Female, age 72, unknown 54.8
2261 Male, age 18, unknown 54.3
2587 Male, age 74, left hemisphere 54.1
1796 Male, age 53, unknown 53.7
1895 Male, age 76, right hemisphere 53.1
1839 Male, age 51, unknown 52.0
1913 Female, age 42, unknown 51.9
2668 Female, age 75, unknown 51.7
1995 Male, age 72, unknown 50.6
2664 Male, age 75, both hemispheres 50.0
Ventral tegmental area
nTPM: 52.5
1915 Female, age 42, unknown 54.3
2218 Male, age 76, both hemispheres 53.5
2410 Female, age 72, unknown 52.7
2223 Female, age 72, unknown 52.5
1942 Male, age 51, unknown 51.7
2021 Male, age 53, unknown 50.5

MIDBRAIN - GTEx RNA-seqi
Average nTPM 52.5
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 52.5
Samples: 139

Max nTPM: 80.6
Min nTPM: 37.6
Std nTPM: 6.7
Median nTPM: 51.7
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 80.6
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 77.7
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 69.1
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 68.0
GTEX-1LH75-0011-R2b-SM-EYYWQ 50-59 years, female 66.5
GTEX-QDT8-0011-R2A-SM-32PKQ 30-39 years, female 66.4
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 63.8
GTEX-N7MS-0011-R2a-SM-2HML6 60-69 years, male 63.4
GTEX-Q2AG-0011-R2A-SM-2HMIT 40-49 years, female 62.8
GTEX-1GN1U-0011-R2a-SM-CL53A 50-59 years, female 62.1
GTEX-1HB9E-0011-R2b-SM-A96RW 50-59 years, male 61.3
Show allShow less

MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 137.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 137.2
FF:10158-103A5 76 years, female 137.2

MIDBRAIN - Pig RNA-seqi
Average nTPM 30.0
Pig sample Sample description nTPM
Midbrain
nTPM: 30.0
Samples: 4

Max nTPM: 32.6
Min nTPM: 26.1
Sample A Female 29.8
Sample B Female 26.1
Sample C Male 32.6
Sample D Male 31.4
Periaqueductal gray
nTPM: 27.9
Samples: 3

Max nTPM: 32.3
Min nTPM: 25.1
Sample B Female 26.3
Sample C Male 32.3
Sample D Male 25.1
Substantia nigra
nTPM: 28.2
Samples: 4

Max nTPM: 35.2
Min nTPM: 19.8
Sample A Female 32.3
Sample B Female 25.6
Sample C Male 35.2
Sample D Male 19.8
Superior colliculi
nTPM: 29.6
Samples: 4

Max nTPM: 32.1
Min nTPM: 26.5
Sample A Female 30.7
Sample B Female 26.5
Sample C Male 32.1
Sample D Male 29.0

MIDBRAIN - Mouse RNA-seqi
Average nTPM 93.2
Mouse sample Sample description nTPM
Midbrain
nTPM: 93.2
Samples: 4

Max nTPM: 98.9
Min nTPM: 85.3
Sample A Male 85.3
Sample B Male 94.9
Sample C Female 98.9
Sample D Female 93.8

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.4
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.4
112649906 Antisense, RP_110421_01_A04, Mouse strain C57BL/6J (56 days, male) 0.5
71724552 Antisense, RP_050927_04_H01, Mouse strain C57BL/6J (56 days, male) 0.3

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.