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MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:27.2 nTPM
HPA:27.2 nTPM
GTEx:32.7 nTPM
FANTOM5:89.5 Scaled Tags Per Million
Pig:11.7 nTPM
Mouse:18.8 nTPM
Allen mouse:1.9 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 27.2
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 26.0
2411 Female, age 72, unknown 27.8
2219 Male, age 76, both hemispheres 27.4
2019 Male, age 18, unknown 26.9
1830 Male, age 51, unknown 26.8
2586 Male, age 75, left hemisphere 26.4
1833 Male, age 53, unknown 25.7
1827 Male, age 72, unknown 25.3
2828 Female, age 72, unknown 25.1
1870 Female, age 42, unknown 24.4
2666 Male, age 74, left hemisphere 24.0
Dorsal raphe nucleus
nTPM: 25.0
2750 Male, age 76, both hemispheres 26.6
1828 Male, age 53, unknown 25.5
2047 Male, age 72, unknown 24.7
2298 Female, age 72, unknown 24.4
2016 Female, age 72, unknown 23.9
Inferior colliculus
nTPM: 24.3
2849 Male, age 72, unknown 26.3
1848 Female, age 42, unknown 23.9
1890 Male, age 53, unknown 23.8
2097 Female, age 72, unknown 23.2
Median raphe nucleus
nTPM: 23.4
2220 Male, age 76, midline 23.4
Pedunculopontine tegmental nucleus
nTPM: 26.4
1921 Female, age 85, both hemispheres 27.3
2334 Male, age 80, both hemispheres 26.8
2338 Male, age 61, both hemispheres 25.1
Periaquaductal grey, anterior
nTPM: 24.4
1947 Male, age 18, unknown 24.5
2502 Female, age 75, unknown 24.4
1795 Male, age 51, unknown 24.2
Periaquaductal grey, dorsal
nTPM: 23.9
2850 Male, age 76, both hemispheres 25.9
2464 Female, age 72, unknown 24.7
1831 Male, age 72, unknown 23.0
1840 Male, age 53, unknown 22.0
Periaquaductal grey, lateral
nTPM: 25.3
2272 Male, age 74, both hemispheres 27.4
2140 Male, age 76, both hemispheres 25.0
2053 Male, age 18, unknown 23.6
Pretectal area
nTPM: 25.3
2667 Female, age 75, unknown 28.8
2007 Male, age 72, unknown 26.7
1817 Female, age 42, unknown 26.4
2407 Male, age 75, both hemispheres 26.1
2316 Male, age 76, right hemisphere 25.7
1815 Male, age 53, unknown 25.1
2825 Male, age 18, unknown 24.4
1944 Female, age 72, unknown 24.2
1816 Male, age 51, unknown 24.1
2273 Male, age 74, both hemispheres 23.6
2224 Female, age 72, unknown 23.2
Red nucleus
nTPM: 27.2
2769 Male, age 72, unknown 28.9
2823 Male, age 76, right hemisphere 28.7
1904 Male, age 53, unknown 27.7
2785 Male, age 18, unknown 27.5
1865 Male, age 51, unknown 27.4
2503 Female, age 72, unknown 27.3
2588 Male, age 74, left hemisphere 26.8
1821 Female, age 72, unknown 26.7
2227 Male, age 72, unknown 26.7
1954 Female, age 42, unknown 26.4
2725 Female, age 75, unknown 26.4
2584 Male, age 75, left hemisphere 26.2
Substantia nigra
nTPM: 25.4
1941 Male, age 53, unknown 29.0
1916 Female, age 42, unknown 28.0
2699 Male, age 18, unknown 27.6
1851 Male, age 51, unknown 26.6
1889 Female, age 72, unknown 25.1
2409 Female, age 72, unknown 24.3
2665 Male, age 74, both hemispheres 24.2
2583 Male, age 75, right hemisphere 23.5
2590 Female, age 75, unknown 23.5
2241 Male, age 72, unknown 22.5
Superior colliculus
nTPM: 25.1
1913 Female, age 42, unknown 26.1
1839 Male, age 51, unknown 26.0
1895 Male, age 76, right hemisphere 25.9
1995 Male, age 72, unknown 25.6
2664 Male, age 75, both hemispheres 25.2
2087 Female, age 72, unknown 24.9
2668 Female, age 75, unknown 24.5
1796 Male, age 53, unknown 24.3
2261 Male, age 18, unknown 24.2
2587 Male, age 74, left hemisphere 24.1
Ventral tegmental area
nTPM: 25.3
2410 Female, age 72, unknown 27.3
1915 Female, age 42, unknown 26.7
2218 Male, age 76, both hemispheres 24.9
2021 Male, age 53, unknown 24.7
2223 Female, age 72, unknown 24.6
1942 Male, age 51, unknown 23.5

MIDBRAIN - GTEx RNA-seqi
Average nTPM 32.7
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 32.7
Samples: 139

Max nTPM: 65.9
Min nTPM: 17.4
Std nTPM: 7.9
Median nTPM: 31.9
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 65.9
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 63.5
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 56.9
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 52.5
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 50.0
GTEX-11DZ1-0011-R2a-SM-DNZZM 50-59 years, male 48.8
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 47.9
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 47.4
GTEX-1HSMO-0011-R2a-SM-CL553 60-69 years, male 45.5
GTEX-13NYS-0011-R2b-SM-5MR4G 60-69 years, male 45.2
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 43.3
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 89.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 89.5
FF:10158-103A5 76 years, female 89.5

MIDBRAIN - Pig RNA-seqi
Average nTPM 11.7
Pig sample Sample description nTPM
Midbrain
nTPM: 11.3
Samples: 4

Max nTPM: 14.6
Min nTPM: 8.3
Sample A Female 12.4
Sample B Female 8.3
Sample C Male 14.6
Sample D Male 9.7
Periaqueductal gray
nTPM: 8.4
Samples: 3

Max nTPM: 10.0
Min nTPM: 7.4
Sample B Female 7.9
Sample C Male 10.0
Sample D Male 7.4
Substantia nigra
nTPM: 10.5
Samples: 4

Max nTPM: 13.2
Min nTPM: 8.1
Sample A Female 13.2
Sample B Female 8.7
Sample C Male 12.0
Sample D Male 8.1
Superior colliculi
nTPM: 11.8
Samples: 4

Max nTPM: 13.6
Min nTPM: 9.5
Sample A Female 12.9
Sample B Female 11.0
Sample C Male 13.6
Sample D Male 9.5

MIDBRAIN - Mouse RNA-seqi
Average nTPM 18.8
Mouse sample Sample description nTPM
Midbrain
nTPM: 18.8
Samples: 4

Max nTPM: 19.7
Min nTPM: 18.0
Sample A Male 18.9
Sample B Male 18.0
Sample C Female 19.7
Sample D Female 18.5

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 1.9
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 1.9
74357611 Antisense, RP_060119_03_B01, Mouse strain C57BL/6J (56 days, male) 1.9

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.