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SEM1
MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:107.5 nTPM
HPA:107.5 nTPM
GTEx:113.1 nTPM
FANTOM5:115.8 Scaled Tags Per Million

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 107.5
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 97.8
1870 Female, age 42, unknown 100.5
2219 Male, age 76, both hemispheres 99.6
1830 Male, age 51, unknown 98.7
2828 Female, age 72, unknown 98.7
1827 Male, age 72, unknown 97.4
1833 Male, age 53, unknown 97.4
2411 Female, age 72, unknown 97.2
2666 Male, age 74, left hemisphere 97.1
2019 Male, age 18, unknown 96.4
2586 Male, age 75, left hemisphere 95.4
Dorsal raphe nucleus
nTPM: 97.0
1828 Male, age 53, unknown 99.3
2750 Male, age 76, both hemispheres 98.0
2047 Male, age 72, unknown 97.0
2016 Female, age 72, unknown 96.0
2298 Female, age 72, unknown 94.6
Inferior colliculus
nTPM: 100.1
2849 Male, age 72, unknown 108.6
1890 Male, age 53, unknown 100.0
1848 Female, age 42, unknown 97.7
2097 Female, age 72, unknown 94.2
Median raphe nucleus
nTPM: 107.5
2220 Male, age 76, midline 107.5
Pedunculopontine tegmental nucleus
nTPM: 99.5
2334 Male, age 80, both hemispheres 101.2
2338 Male, age 61, both hemispheres 99.9
1921 Female, age 85, both hemispheres 97.4
Periaquaductal grey, anterior
nTPM: 95.0
1795 Male, age 51, unknown 96.0
1947 Male, age 18, unknown 94.6
2502 Female, age 75, unknown 94.5
Periaquaductal grey, dorsal
nTPM: 101.6
2850 Male, age 76, both hemispheres 113.5
2464 Female, age 72, unknown 98.8
1840 Male, age 53, unknown 97.3
1831 Male, age 72, unknown 97.0
Periaquaductal grey, lateral
nTPM: 96.4
2140 Male, age 76, both hemispheres 99.7
2053 Male, age 18, unknown 95.3
2272 Male, age 74, both hemispheres 94.1
Pretectal area
nTPM: 98.4
2667 Female, age 75, unknown 102.2
2407 Male, age 75, both hemispheres 100.9
1815 Male, age 53, unknown 100.8
2825 Male, age 18, unknown 99.7
1817 Female, age 42, unknown 99.6
2007 Male, age 72, unknown 98.3
1944 Female, age 72, unknown 97.8
2224 Female, age 72, unknown 97.6
1816 Male, age 51, unknown 96.7
2273 Male, age 74, both hemispheres 94.5
2316 Male, age 76, right hemisphere 94.0
Red nucleus
nTPM: 100.1
1954 Female, age 42, unknown 104.6
2725 Female, age 75, unknown 102.6
1904 Male, age 53, unknown 101.9
1865 Male, age 51, unknown 101.7
2503 Female, age 72, unknown 101.5
2823 Male, age 76, right hemisphere 101.2
2785 Male, age 18, unknown 100.3
2227 Male, age 72, unknown 99.2
1821 Female, age 72, unknown 98.4
2769 Male, age 72, unknown 97.3
2584 Male, age 75, left hemisphere 97.1
2588 Male, age 74, left hemisphere 95.7
Substantia nigra
nTPM: 99.2
2699 Male, age 18, unknown 106.1
1916 Female, age 42, unknown 102.1
1889 Female, age 72, unknown 100.8
2409 Female, age 72, unknown 100.8
2665 Male, age 74, both hemispheres 100.0
1941 Male, age 53, unknown 97.8
1851 Male, age 51, unknown 97.4
2241 Male, age 72, unknown 96.7
2583 Male, age 75, right hemisphere 95.1
2590 Female, age 75, unknown 95.1
Superior colliculus
nTPM: 96.3
2587 Male, age 74, left hemisphere 100.0
1995 Male, age 72, unknown 98.3
1839 Male, age 51, unknown 97.6
1895 Male, age 76, right hemisphere 97.6
1913 Female, age 42, unknown 96.3
2087 Female, age 72, unknown 95.3
2668 Female, age 75, unknown 95.3
1796 Male, age 53, unknown 94.8
2664 Male, age 75, both hemispheres 94.7
2261 Male, age 18, unknown 92.6
Ventral tegmental area
nTPM: 100.4
2218 Male, age 76, both hemispheres 102.9
1915 Female, age 42, unknown 101.8
2223 Female, age 72, unknown 100.8
2410 Female, age 72, unknown 99.6
2021 Male, age 53, unknown 99.3
1942 Male, age 51, unknown 98.0

MIDBRAIN - GTEx RNA-seqi
Average nTPM 113.1
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 113.1
Samples: 139

Max nTPM: 207.2
Min nTPM: 33.5
Std nTPM: 29.9
Median nTPM: 111.1
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 207.2
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 184.6
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 181.9
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 181.6
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 173.2
GTEX-N7MT-0011-R2a-SM-2I3GI 60-69 years, female 166.4
GTEX-1MA7X-0011-R2b-SM-EZ6MT 60-69 years, male 166.4
GTEX-12WSF-0011-R2a-SM-5DUVU 70-79 years, male 165.7
GTEX-14C5O-0011-R2a-SM-5ZZV2 60-69 years, male 165.2
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 161.8
GTEX-1399T-0011-R2b-SM-5DUXM 60-69 years, male 161.5
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 115.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 115.8
FF:10158-103A5 76 years, female 115.8

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