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HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: Not detected
Neuronal cells: Low
RNA expressioni
Consensus:33.6 nTPM
HPA:33.6 nTPM
GTEx:37.5 nTPM
FANTOM5:23.0 Scaled Tags Per Million
Pig:77.5 nTPM
Mouse:32.2 nTPM
Allen mouse:5.2 Expression energy

HIPPOCAMPUS - Antibody stainingi
Antibody HPA003011
Glial cells Not detected
Neuronal cells Low



HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 33.6
Sample id Sample description nTPM
Hippocampus
nTPM: 31.1
2621 Female, age 67, right hemisphere 36.8
1898 Male, age 80, left hemisphere 34.8
2148 Female, age 91, left hemisphere 30.7
1855 Male, age 76, left hemisphere 29.4
2529 Female, age 94, left hemisphere 27.9
1911 Female, age 85, right hemisphere 27.1
Dentate gyrus
nTPM: 30.2
2530 Female, age 94, left hemisphere 34.9
2531 Female, age 67, both hemispheres 33.7
2010 Male, age 76, both hemispheres 31.8
1927 Female, age 91, both hemispheres 30.4
2528 Male, age 74, both hemispheres 25.3
2246 Female, age 85, both hemispheres 25.0
Entorhinal gyrus
nTPM: 33.6
2613 Female, age 94, left hemisphere 40.1
2764 Male, age 80, right hemisphere 36.9
1787 Male, age 76, left hemisphere 34.2
2686 Male, age 75, right hemisphere 32.1
1938 Female, age 85, left hemisphere 31.4
2117 Female, age 91, right hemisphere 27.2
Hippocampus, CA1
nTPM: 31.8
2749 Male, age 80, left hemisphere 50.2
2527 Male, age 74, both hemispheres 28.8
1873 Female, age 85, both hemispheres 28.3
2045 Male, age 76, both hemispheres 27.2
2082 Female, age 91, right hemisphere 24.7
Hippocampus, CA2
nTPM: 30.3
1963 Male, age 80, left hemisphere 43.2
1892 Male, age 76, both hemispheres 33.1
2437 Female, age 94, left hemisphere 29.9
2249 Male, age 74, both hemispheres 27.9
2113 Female, age 91, right hemisphere 25.1
1940 Female, age 85, left hemisphere 22.5
Hippocampus, CA3
nTPM: 32.2
2137 Male, age 80, left hemisphere 41.1
2861 Female, age 67, both hemispheres 38.0
2620 Female, age 94, left hemisphere 32.5
2436 Male, age 74, both hemispheres 30.9
1867 Male, age 76, both hemispheres 26.3
1891 Female, age 85, both hemispheres 24.2
Parahippocampal cortex
nTPM: 29.9
2245 Female, age 91, both hemispheres 34.0
2532 Female, age 72, left hemisphere 33.7
2693 Female, age 94, both hemispheres 31.7
1933 Female, age 85, both hemispheres 31.6
2622 Female, age 67, right hemisphere 31.5
1850 Male, age 80, both hemispheres 30.8
1990 Female, age 91, right hemisphere 27.2
2250 Female, age 67, right hemisphere 26.4
2692 Male, age 74, both hemispheres 26.2
2018 Male, age 76, both hemispheres 26.1
Perirhinal gyrus
nTPM: 33.6
2521 Female, age 94, right hemisphere 37.3
1847 Female, age 91, left hemisphere 35.9
1794 Male, age 80, right hemisphere 34.8
2848 Male, age 76, right hemisphere 33.0
1841 Female, age 85, right hemisphere 27.1
Subiculum
nTPM: 28.1
1977 Female, age 85, both hemispheres 32.0
1901 Male, age 80, both hemispheres 31.2
2438 Female, age 94, left hemisphere 30.2
2042 Male, age 76, both hemispheres 27.6
2619 Male, age 74, both hemispheres 25.3
2729 Female, age 91, right hemisphere 22.3

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 37.5
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 37.5
Samples: 197

Max nTPM: 68.9
Min nTPM: 4.5
Std nTPM: 9.2
Median nTPM: 37.8
GTEX-1H4P4-0011-R1b-SM-CL54V 50-59 years, male 68.9
GTEX-1HT8W-0011-R1b-SM-CJI3V 30-39 years, male 56.8
GTEX-13PDP-0011-R1a-SM-5PNX5 60-69 years, male 56.7
GTEX-Q2AG-0011-R1A-SM-2HMJI 40-49 years, female 56.0
GTEX-13FTY-0011-R1a-SM-5LZXE 40-49 years, female 55.8
GTEX-WHSE-0011-R1A-SM-3P5ZK 20-29 years, male 55.4
GTEX-13112-0011-R1b-SM-5HL7K 50-59 years, male 54.4
GTEX-18A6Q-0011-R1b-SM-731DI 60-69 years, male 53.9
GTEX-13QJC-0011-R1b-SM-5S2UU 60-69 years, female 53.7
GTEX-13FLW-0011-R1b-SM-5LZX2 50-59 years, male 52.9
GTEX-13NYB-0011-R1b-SM-5KM4F 40-49 years, male 52.6
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 23.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 23.0
FF:10169-103B7 60 years, female 29.2
FF:10153-102I9 76 years, female 16.7

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 77.5
Pig sample Sample description nTPM
Dorsal hippocampus
nTPM: 77.5
Samples: 4

Max nTPM: 100.0
Min nTPM: 50.9
Sample A Female 100.0
Sample B Female 80.8
Sample C Male 78.3
Sample D Male 50.9
Entorhinal cortex
nTPM: 68.3
Samples: 4

Max nTPM: 71.0
Min nTPM: 66.0
Sample A Female 68.6
Sample B Female 67.5
Sample C Male 71.0
Sample D Male 66.0
Subiculum
nTPM: 65.7
Samples: 4

Max nTPM: 85.2
Min nTPM: 56.2
Sample A Female 85.2
Sample B Female 62.4
Sample C Male 58.9
Sample D Male 56.2
Ventral hippocampus
nTPM: 67.3
Samples: 4

Max nTPM: 85.3
Min nTPM: 46.0
Sample A Female 60.7
Sample B Female 46.0
Sample C Male 77.1
Sample D Male 85.3

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 32.2
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 32.2
Samples: 4

Max nTPM: 35.3
Min nTPM: 27.3
Sample A Male 32.0
Sample B Male 35.3
Sample C Female 27.3
Sample D Female 34.0
Hippocampal formation
nTPM: 27.1
Samples: 4

Max nTPM: 28.7
Min nTPM: 25.2
Sample A Male 25.2
Sample B Male 28.7
Sample C Female 26.9
Sample D Female 27.6

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 5.2
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 5.2
1730 Antisense, RP_040526_01_G03, Mouse strain C57BL/6J (56 days, male) 5.2
1731 Antisense, RP_040526_01_G03, Mouse strain C57BL/6J (56 days, male) 0.2

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.