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CDC42EP1
MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:104.5 nTPM
HPA:104.5 nTPM
GTEx:68.9 nTPM
FANTOM5:270.4 Scaled Tags Per Million
Pig:41.7 nTPM
Mouse:22.6 nTPM
Allen mouse:0.5 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 104.5
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 79.9
1830 Male, age 51, unknown 98.2
1833 Male, age 53, unknown 95.1
1870 Female, age 42, unknown 91.2
2411 Female, age 72, unknown 89.9
2019 Male, age 18, unknown 86.7
2586 Male, age 75, left hemisphere 84.4
2828 Female, age 72, unknown 79.5
2666 Male, age 74, left hemisphere 68.5
1827 Male, age 72, unknown 58.6
2219 Male, age 76, both hemispheres 46.7
Dorsal raphe nucleus
nTPM: 56.2
2750 Male, age 76, both hemispheres 84.8
1828 Male, age 53, unknown 59.9
2016 Female, age 72, unknown 58.2
2047 Male, age 72, unknown 41.7
2298 Female, age 72, unknown 36.3
Inferior colliculus
nTPM: 53.2
2849 Male, age 72, unknown 59.8
1848 Female, age 42, unknown 57.9
1890 Male, age 53, unknown 53.5
2097 Female, age 72, unknown 41.5
Median raphe nucleus
nTPM: 46.7
2220 Male, age 76, midline 46.7
Pedunculopontine tegmental nucleus
nTPM: 67.9
2338 Male, age 61, both hemispheres 76.4
2334 Male, age 80, both hemispheres 73.4
1921 Female, age 85, both hemispheres 54.0
Periaquaductal grey, anterior
nTPM: 50.3
2502 Female, age 75, unknown 52.4
1947 Male, age 18, unknown 52.2
1795 Male, age 51, unknown 46.2
Periaquaductal grey, dorsal
nTPM: 44.2
2464 Female, age 72, unknown 59.0
1831 Male, age 72, unknown 44.7
2850 Male, age 76, both hemispheres 42.2
1840 Male, age 53, unknown 30.7
Periaquaductal grey, lateral
nTPM: 48.6
2272 Male, age 74, both hemispheres 53.3
2053 Male, age 18, unknown 52.5
2140 Male, age 76, both hemispheres 39.9
Pretectal area
nTPM: 52.8
2407 Male, age 75, both hemispheres 70.4
1815 Male, age 53, unknown 69.5
2316 Male, age 76, right hemisphere 62.7
1817 Female, age 42, unknown 59.3
2825 Male, age 18, unknown 55.3
2007 Male, age 72, unknown 53.6
2667 Female, age 75, unknown 49.0
2273 Male, age 74, both hemispheres 46.4
2224 Female, age 72, unknown 42.0
1944 Female, age 72, unknown 37.5
1816 Male, age 51, unknown 35.2
Red nucleus
nTPM: 104.5
2769 Male, age 72, unknown 119.1
1904 Male, age 53, unknown 118.3
2227 Male, age 72, unknown 115.0
1865 Male, age 51, unknown 113.7
2785 Male, age 18, unknown 110.7
2823 Male, age 76, right hemisphere 109.0
1821 Female, age 72, unknown 102.7
1954 Female, age 42, unknown 100.3
2503 Female, age 72, unknown 99.4
2588 Male, age 74, left hemisphere 99.1
2584 Male, age 75, left hemisphere 88.1
2725 Female, age 75, unknown 78.5
Substantia nigra
nTPM: 57.8
2583 Male, age 75, right hemisphere 81.6
2590 Female, age 75, unknown 72.3
1851 Male, age 51, unknown 65.5
1889 Female, age 72, unknown 60.6
2699 Male, age 18, unknown 60.1
2409 Female, age 72, unknown 57.7
1941 Male, age 53, unknown 48.6
1916 Female, age 42, unknown 44.7
2665 Male, age 74, both hemispheres 44.6
2241 Male, age 72, unknown 41.9
Superior colliculus
nTPM: 66.4
1913 Female, age 42, unknown 95.8
1995 Male, age 72, unknown 95.6
1895 Male, age 76, right hemisphere 71.3
1839 Male, age 51, unknown 70.4
2668 Female, age 75, unknown 65.2
2587 Male, age 74, left hemisphere 63.7
1796 Male, age 53, unknown 58.3
2664 Male, age 75, both hemispheres 57.7
2087 Female, age 72, unknown 44.2
2261 Male, age 18, unknown 41.5
Ventral tegmental area
nTPM: 64.2
2223 Female, age 72, unknown 87.2
2410 Female, age 72, unknown 75.0
1942 Male, age 51, unknown 58.6
2218 Male, age 76, both hemispheres 56.1
1915 Female, age 42, unknown 54.2
2021 Male, age 53, unknown 54.1

MIDBRAIN - GTEx RNA-seqi
Average nTPM 68.9
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 68.9
Samples: 139

Max nTPM: 284.4
Min nTPM: 23.9
Std nTPM: 37.1
Median nTPM: 59.4
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 284.4
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 211.5
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 194.3
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 181.8
GTEX-ZAB4-0011-R2a-SM-4RGNP 40-49 years, male 148.2
GTEX-N7MT-0011-R2a-SM-2I3GI 60-69 years, female 125.6
GTEX-NPJ7-0011-R2a-SM-2I3GF 60-69 years, female 124.6
GTEX-Q2AG-0011-R2A-SM-2HMIT 40-49 years, female 121.9
GTEX-139TS-0011-R2b-SM-5J1MX 60-69 years, male 119.6
GTEX-T5JC-0011-R2A-SM-32PLZ 20-29 years, male 117.2
GTEX-1HSMO-0011-R2a-SM-CL553 60-69 years, male 116.1
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 270.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 270.4
FF:10158-103A5 76 years, female 270.4

MIDBRAIN - Pig RNA-seqi
Average nTPM 41.7
Pig sample Sample description nTPM
Midbrain
nTPM: 37.5
Samples: 4

Max nTPM: 51.5
Min nTPM: 27.8
Sample A Female 51.5
Sample B Female 39.6
Sample C Male 27.8
Sample D Male 30.9
Periaqueductal gray
nTPM: 32.0
Samples: 3

Max nTPM: 36.7
Min nTPM: 28.0
Sample B Female 36.7
Sample C Male 28.0
Sample D Male 31.4
Substantia nigra
nTPM: 41.7
Samples: 4

Max nTPM: 59.1
Min nTPM: 26.9
Sample A Female 40.0
Sample B Female 26.9
Sample C Male 40.8
Sample D Male 59.1
Superior colliculi
nTPM: 36.5
Samples: 4

Max nTPM: 48.3
Min nTPM: 16.8
Sample A Female 44.6
Sample B Female 16.8
Sample C Male 36.3
Sample D Male 48.3

MIDBRAIN - Mouse RNA-seqi
Average nTPM 22.6
Mouse sample Sample description nTPM
Midbrain
nTPM: 22.6
Samples: 4

Max nTPM: 24.0
Min nTPM: 18.6
Sample A Male 24.0
Sample B Male 23.7
Sample C Female 18.6
Sample D Female 24.0

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.5
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.5
70814345 Antisense, RP_050725_02_F12, Mouse strain C57BL/6J (56 days, male) 0.5
68342384 Antisense, RP_041214_01_C09, Mouse strain C57BL/6J (56 days, male) 0.5

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.