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HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: Low
Neuronal cells: Medium
RNA expressioni
Consensus:41.4 nTPM
HPA:41.4 nTPM
GTEx:26.4 nTPM
FANTOM5:161.6 Scaled Tags Per Million
Pig:22.1 nTPM
Mouse:43.0 nTPM
Allen mouse:10.7 Expression energy

HIPPOCAMPUS - Antibody stainingi
Antibody HPA021421Antibody HPA021430
Glial cells MediumLow
Neuronal cells HighMedium





HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 41.4
Sample id Sample description nTPM
Hippocampus
nTPM: 34.0
2148 Female, age 91, left hemisphere 44.3
2621 Female, age 67, right hemisphere 40.9
1911 Female, age 85, right hemisphere 33.9
2529 Female, age 94, left hemisphere 33.5
1855 Male, age 76, left hemisphere 29.2
1898 Male, age 80, left hemisphere 22.2
Dentate gyrus
nTPM: 34.3
2531 Female, age 67, both hemispheres 49.2
2530 Female, age 94, left hemisphere 42.4
1927 Female, age 91, both hemispheres 42.0
2010 Male, age 76, both hemispheres 27.6
2246 Female, age 85, both hemispheres 24.9
2528 Male, age 74, both hemispheres 20.0
Entorhinal gyrus
nTPM: 20.8
2686 Male, age 75, right hemisphere 29.8
2613 Female, age 94, left hemisphere 24.4
2117 Female, age 91, right hemisphere 24.0
1787 Male, age 76, left hemisphere 16.3
2764 Male, age 80, right hemisphere 15.3
1938 Female, age 85, left hemisphere 15.1
Hippocampus, CA1
nTPM: 32.2
2045 Male, age 76, both hemispheres 50.0
2749 Male, age 80, left hemisphere 39.3
1873 Female, age 85, both hemispheres 31.5
2527 Male, age 74, both hemispheres 21.7
2082 Female, age 91, right hemisphere 18.6
Hippocampus, CA2
nTPM: 27.1
1963 Male, age 80, left hemisphere 42.4
1892 Male, age 76, both hemispheres 33.2
2437 Female, age 94, left hemisphere 31.7
2113 Female, age 91, right hemisphere 22.5
2249 Male, age 74, both hemispheres 17.6
1940 Female, age 85, left hemisphere 15.5
Hippocampus, CA3
nTPM: 41.4
2620 Female, age 94, left hemisphere 75.6
2861 Female, age 67, both hemispheres 45.6
2137 Male, age 80, left hemisphere 43.7
1867 Male, age 76, both hemispheres 37.4
1891 Female, age 85, both hemispheres 28.7
2436 Male, age 74, both hemispheres 17.2
Parahippocampal cortex
nTPM: 18.8
2245 Female, age 91, both hemispheres 26.2
2692 Male, age 74, both hemispheres 23.9
2532 Female, age 72, left hemisphere 21.9
2622 Female, age 67, right hemisphere 21.4
2693 Female, age 94, both hemispheres 20.5
2018 Male, age 76, both hemispheres 19.6
1990 Female, age 91, right hemisphere 15.8
2250 Female, age 67, right hemisphere 15.0
1933 Female, age 85, both hemispheres 12.1
1850 Male, age 80, both hemispheres 12.0
Perirhinal gyrus
nTPM: 13.2
2521 Female, age 94, right hemisphere 15.6
2848 Male, age 76, right hemisphere 15.5
1841 Female, age 85, right hemisphere 12.8
1794 Male, age 80, right hemisphere 12.3
1847 Female, age 91, left hemisphere 10.0
Subiculum
nTPM: 26.0
2438 Female, age 94, left hemisphere 32.4
1901 Male, age 80, both hemispheres 29.5
2729 Female, age 91, right hemisphere 28.1
2042 Male, age 76, both hemispheres 27.2
2619 Male, age 74, both hemispheres 21.5
1977 Female, age 85, both hemispheres 17.3

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 26.4
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 26.4
Samples: 197

Max nTPM: 58.1
Min nTPM: 11.5
Std nTPM: 7.4
Median nTPM: 25.5
GTEX-18A6Q-0011-R1b-SM-731DI 60-69 years, male 58.1
GTEX-1H23P-0011-R1a-SM-ACKVC 60-69 years, male 54.5
GTEX-13QIC-0011-R1a-SM-5O9CJ 60-69 years, female 50.4
GTEX-1H4P4-0011-R1b-SM-CL54V 50-59 years, male 48.1
GTEX-1LB8K-0011-R1b-SM-EZ6MV 50-59 years, male 45.3
GTEX-QMR6-0011-R1A-SM-32PKW 50-59 years, male 43.1
GTEX-11ZTS-0011-R1a-SM-5BC71 60-69 years, female 42.9
GTEX-XMD1-0011-R1A-SM-4AT4C 60-69 years, male 42.4
GTEX-1E1VI-0011-R1a-SM-ARZMM 50-59 years, male 41.5
GTEX-17EVP-0011-R1a-SM-7DHLA 40-49 years, male 41.1
GTEX-17MF6-0011-R1a-SM-72D6O 40-49 years, male 41.0
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 161.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 161.6
FF:10153-102I9 76 years, female 163.1
FF:10169-103B7 60 years, female 160.0

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 22.1
Pig sample Sample description nTPM
Dorsal hippocampus
nTPM: 22.1
Samples: 4

Max nTPM: 28.5
Min nTPM: 13.6
Sample A Female 26.4
Sample B Female 20.0
Sample C Male 28.5
Sample D Male 13.6
Entorhinal cortex
nTPM: 18.3
Samples: 4

Max nTPM: 23.2
Min nTPM: 15.8
Sample A Female 16.5
Sample B Female 23.2
Sample C Male 15.8
Sample D Male 17.5
Subiculum
nTPM: 17.2
Samples: 4

Max nTPM: 21.4
Min nTPM: 13.6
Sample A Female 21.4
Sample B Female 17.3
Sample C Male 16.3
Sample D Male 13.6
Ventral hippocampus
nTPM: 19.8
Samples: 4

Max nTPM: 24.5
Min nTPM: 15.1
Sample A Female 19.1
Sample B Female 15.1
Sample C Male 24.5
Sample D Male 20.5

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 43.0
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 32.0
Samples: 4

Max nTPM: 34.5
Min nTPM: 30.0
Sample A Male 31.5
Sample B Male 30.0
Sample C Female 34.5
Sample D Female 31.8
Hippocampal formation
nTPM: 43.0
Samples: 4

Max nTPM: 48.4
Min nTPM: 40.0
Sample A Male 40.0
Sample B Male 41.1
Sample C Female 48.4
Sample D Female 42.6

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 10.7
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 10.7
70611048 Antisense, RP_050630_01_G09, Mouse strain C57BL/6J (56 days, male) 10.7

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The Human Protein Atlas

The Human Protein Atlas project is funded
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