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MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:55.5 nTPM
HPA:55.5 nTPM
GTEx:66.9 nTPM
FANTOM5:41.2 Scaled Tags Per Million
Pig:33.8 nTPM
Mouse:27.4 nTPM
Allen mouse:0.0 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 55.5
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 52.5
2411 Female, age 72, unknown 57.1
1870 Female, age 42, unknown 55.6
1827 Male, age 72, unknown 53.7
2828 Female, age 72, unknown 53.4
1830 Male, age 51, unknown 52.3
2666 Male, age 74, left hemisphere 52.2
2019 Male, age 18, unknown 51.8
1833 Male, age 53, unknown 51.4
2586 Male, age 75, left hemisphere 48.8
2219 Male, age 76, both hemispheres 48.5
Dorsal raphe nucleus
nTPM: 54.5
2750 Male, age 76, both hemispheres 56.0
2047 Male, age 72, unknown 55.9
2298 Female, age 72, unknown 55.0
1828 Male, age 53, unknown 53.5
2016 Female, age 72, unknown 52.0
Inferior colliculus
nTPM: 52.7
2097 Female, age 72, unknown 56.2
1890 Male, age 53, unknown 53.7
1848 Female, age 42, unknown 52.0
2849 Male, age 72, unknown 48.9
Median raphe nucleus
nTPM: 55.0
2220 Male, age 76, midline 55.0
Pedunculopontine tegmental nucleus
nTPM: 53.3
1921 Female, age 85, both hemispheres 54.4
2334 Male, age 80, both hemispheres 54.1
2338 Male, age 61, both hemispheres 51.3
Periaquaductal grey, anterior
nTPM: 53.5
1947 Male, age 18, unknown 55.5
1795 Male, age 51, unknown 52.8
2502 Female, age 75, unknown 52.2
Periaquaductal grey, dorsal
nTPM: 52.6
1831 Male, age 72, unknown 56.1
2464 Female, age 72, unknown 52.3
1840 Male, age 53, unknown 51.7
2850 Male, age 76, both hemispheres 50.1
Periaquaductal grey, lateral
nTPM: 53.2
2053 Male, age 18, unknown 55.1
2272 Male, age 74, both hemispheres 54.6
2140 Male, age 76, both hemispheres 49.8
Pretectal area
nTPM: 55.5
2273 Male, age 74, both hemispheres 58.3
1816 Male, age 51, unknown 57.1
1817 Female, age 42, unknown 56.9
2667 Female, age 75, unknown 56.9
1944 Female, age 72, unknown 56.7
1815 Male, age 53, unknown 55.5
2007 Male, age 72, unknown 54.7
2224 Female, age 72, unknown 54.2
2316 Male, age 76, right hemisphere 53.5
2825 Male, age 18, unknown 53.5
2407 Male, age 75, both hemispheres 53.0
Red nucleus
nTPM: 54.1
1821 Female, age 72, unknown 56.9
2503 Female, age 72, unknown 55.8
2588 Male, age 74, left hemisphere 55.4
1954 Female, age 42, unknown 55.1
2823 Male, age 76, right hemisphere 55.0
1904 Male, age 53, unknown 54.2
1865 Male, age 51, unknown 53.8
2785 Male, age 18, unknown 53.7
2725 Female, age 75, unknown 53.5
2769 Male, age 72, unknown 52.4
2227 Male, age 72, unknown 51.8
2584 Male, age 75, left hemisphere 51.7
Substantia nigra
nTPM: 54.1
2590 Female, age 75, unknown 57.1
2409 Female, age 72, unknown 56.6
1851 Male, age 51, unknown 55.8
1889 Female, age 72, unknown 55.5
2241 Male, age 72, unknown 54.9
1916 Female, age 42, unknown 53.3
1941 Male, age 53, unknown 52.8
2699 Male, age 18, unknown 52.4
2583 Male, age 75, right hemisphere 52.2
2665 Male, age 74, both hemispheres 50.7
Superior colliculus
nTPM: 53.2
1913 Female, age 42, unknown 55.6
1995 Male, age 72, unknown 54.9
2087 Female, age 72, unknown 54.6
1796 Male, age 53, unknown 54.1
2587 Male, age 74, left hemisphere 54.0
2261 Male, age 18, unknown 53.6
1895 Male, age 76, right hemisphere 52.3
2664 Male, age 75, both hemispheres 51.8
2668 Female, age 75, unknown 51.0
1839 Male, age 51, unknown 50.5
Ventral tegmental area
nTPM: 53.9
2021 Male, age 53, unknown 55.4
1915 Female, age 42, unknown 54.6
1942 Male, age 51, unknown 54.4
2223 Female, age 72, unknown 53.3
2410 Female, age 72, unknown 53.2
2218 Male, age 76, both hemispheres 52.3

MIDBRAIN - GTEx RNA-seqi
Average nTPM 66.9
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 66.9
Samples: 139

Max nTPM: 105.9
Min nTPM: 40.9
Std nTPM: 10.7
Median nTPM: 66.2
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 105.9
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 93.5
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 90.4
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 89.0
GTEX-12WSH-0011-R2a-SM-5GU68 50-59 years, male 87.4
GTEX-1GN1U-0011-R2a-SM-CL53A 50-59 years, female 86.5
GTEX-139TS-0011-R2b-SM-5J1MX 60-69 years, male 85.5
GTEX-1HSMO-0011-R2a-SM-CL553 60-69 years, male 85.5
GTEX-T2IS-0011-R2A-SM-32QPF 20-29 years, female 85.3
GTEX-1H3O1-0011-R2b-SM-CKZOT 60-69 years, male 83.5
GTEX-1A8G7-0011-R2a-SM-7IGQI 60-69 years, male 83.3
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 41.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 41.2
FF:10158-103A5 76 years, female 41.2

MIDBRAIN - Pig RNA-seqi
Average nTPM 33.8
Pig sample Sample description nTPM
Midbrain
nTPM: 32.5
Samples: 4

Max nTPM: 37.1
Min nTPM: 27.1
Sample A Female 32.8
Sample B Female 27.1
Sample C Male 37.1
Sample D Male 33.0
Periaqueductal gray
nTPM: 30.9
Samples: 3

Max nTPM: 36.4
Min nTPM: 24.9
Sample B Female 24.9
Sample C Male 36.4
Sample D Male 31.4
Substantia nigra
nTPM: 32.4
Samples: 4

Max nTPM: 40.5
Min nTPM: 24.1
Sample A Female 40.5
Sample B Female 27.3
Sample C Male 37.8
Sample D Male 24.1
Superior colliculi
nTPM: 33.8
Samples: 4

Max nTPM: 38.8
Min nTPM: 25.3
Sample A Female 37.4
Sample B Female 25.3
Sample C Male 38.8
Sample D Male 33.7

MIDBRAIN - Mouse RNA-seqi
Average nTPM 27.4
Mouse sample Sample description nTPM
Midbrain
nTPM: 27.4
Samples: 4

Max nTPM: 30.1
Min nTPM: 26.0
Sample A Male 26.6
Sample B Male 30.1
Sample C Female 26.0
Sample D Female 26.9

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.0
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.0
76081899 Antisense, RP_060608_04_D03, Mouse strain C57BL/6J (56 days, male) 0.0

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The Human Protein Atlas

The Human Protein Atlas project is funded
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