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HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: Not detected
Neuronal cells: Not detected
Mouse brain, Intensity
Hippocampal formationi 		109.322
RNA expressioni
Consensus:22.8 nTPM
HPA:22.8 nTPM
GTEx:17.1 nTPM
FANTOM5:26.8 Scaled Tags Per Million
Pig:5.1 nTPM
Mouse:3.4 nTPM
Allen mouse:0.8 Expression energy

HIPPOCAMPUS - Antibody stainingi
Antibody HPA007600
Glial cells Low
Neuronal cells Not detected



HIPPOCAMPAL FORMATION - Mouse brain profilei , antibody HPA027823
Hippocampal formation mean intensity 109.322
intensityi
FRONT BACK
Polymorph layer of the dentate gyrus 109.322
Molecular layer of the dentate gyrus 34.033
Granular dentate gyrus 47.532
CA1 - oriens layer 67.497
CA1 - pyramidal layer 70.933
CA1 - radiatum layer 65.612
CA2 - oriens layer 59.277
CA2 - pyramidal layer 92.613
CA2 - radiatum layer 60.040
CA3 - oriens layer 52.556
CA3 - pyramidal layer 105.883
CA3 - radiatum layer 60.533
Stratum lucidum 63.911
Lacunosum moleculare 89.559
Subiculum 70.952

HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 22.8
Sample id Sample description nTPM
Hippocampus
nTPM: 22.7
1911 Female, age 85, right hemisphere 24.3
1898 Male, age 80, left hemisphere 24.1
2148 Female, age 91, left hemisphere 23.0
1855 Male, age 76, left hemisphere 22.3
2529 Female, age 94, left hemisphere 21.8
2621 Female, age 67, right hemisphere 20.6
Dentate gyrus
nTPM: 21.4
2528 Male, age 74, both hemispheres 26.5
2246 Female, age 85, both hemispheres 23.1
1927 Female, age 91, both hemispheres 21.2
2010 Male, age 76, both hemispheres 21.0
2531 Female, age 67, both hemispheres 18.9
2530 Female, age 94, left hemisphere 17.9
Entorhinal gyrus
nTPM: 20.5
2117 Female, age 91, right hemisphere 24.7
1938 Female, age 85, left hemisphere 21.6
2764 Male, age 80, right hemisphere 19.8
1787 Male, age 76, left hemisphere 19.7
2686 Male, age 75, right hemisphere 19.3
2613 Female, age 94, left hemisphere 18.3
Hippocampus, CA1
nTPM: 22.8
2527 Male, age 74, both hemispheres 25.7
1873 Female, age 85, both hemispheres 25.0
2082 Female, age 91, right hemisphere 23.3
2045 Male, age 76, both hemispheres 20.3
2749 Male, age 80, left hemisphere 19.5
Hippocampus, CA2
nTPM: 22.4
2249 Male, age 74, both hemispheres 28.7
1940 Female, age 85, left hemisphere 24.6
2113 Female, age 91, right hemisphere 22.9
1963 Male, age 80, left hemisphere 20.2
1892 Male, age 76, both hemispheres 19.1
2437 Female, age 94, left hemisphere 19.1
Hippocampus, CA3
nTPM: 21.3
1891 Female, age 85, both hemispheres 24.6
2436 Male, age 74, both hemispheres 24.2
2620 Female, age 94, left hemisphere 20.4
2137 Male, age 80, left hemisphere 19.9
1867 Male, age 76, both hemispheres 19.8
2861 Female, age 67, both hemispheres 19.1
Parahippocampal cortex
nTPM: 21.2
2250 Female, age 67, right hemisphere 23.8
2692 Male, age 74, both hemispheres 22.2
1933 Female, age 85, both hemispheres 22.1
2245 Female, age 91, both hemispheres 21.1
1850 Male, age 80, both hemispheres 20.7
2018 Male, age 76, both hemispheres 20.7
1990 Female, age 91, right hemisphere 20.6
2622 Female, age 67, right hemisphere 20.4
2693 Female, age 94, both hemispheres 20.4
2532 Female, age 72, left hemisphere 19.4
Perirhinal gyrus
nTPM: 21.1
1847 Female, age 91, left hemisphere 22.2
2521 Female, age 94, right hemisphere 22.2
1794 Male, age 80, right hemisphere 21.1
1841 Female, age 85, right hemisphere 21.0
2848 Male, age 76, right hemisphere 18.9
Subiculum
nTPM: 22.2
2729 Female, age 91, right hemisphere 25.4
2619 Male, age 74, both hemispheres 23.7
2438 Female, age 94, left hemisphere 21.9
1977 Female, age 85, both hemispheres 21.2
1901 Male, age 80, both hemispheres 20.9
2042 Male, age 76, both hemispheres 20.4

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 17.1
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 17.1
Samples: 197

Max nTPM: 51.5
Min nTPM: 3.7
Std nTPM: 8.4
Median nTPM: 15.7
GTEX-12ZZX-0011-R1a-SM-5EQ6B 40-49 years, female 51.5
GTEX-QVUS-0011-R1A-SM-3GAD2 60-69 years, female 49.4
GTEX-1F6IF-0011-R1b-SM-9WG78 60-69 years, male 44.3
GTEX-PWO3-0011-R1A-SM-2I5EW 60-69 years, female 35.8
GTEX-ZDXO-0011-R1a-SM-4WKF4 60-69 years, male 34.8
GTEX-11ZVC-0011-R1b-SM-5BC6M 50-59 years, female 34.6
GTEX-1BAJH-0011-R1a-SM-7P8SV 70-79 years, male 33.9
GTEX-1IY9M-0011-R1a-SM-EXURZ 60-69 years, male 33.4
GTEX-14E7W-0011-R1b-SM-5YYAT 70-79 years, male 33.0
GTEX-1LG7Y-0011-R1a-SM-EYYWV 50-59 years, male 32.4
GTEX-QVJO-0011-R1A-SM-2S1QI 60-69 years, female 32.3
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 26.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 26.8
FF:10153-102I9 76 years, female 37.9
FF:10169-103B7 60 years, female 15.6

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 5.1
Pig sample Sample description nTPM
Dorsal hippocampus
nTPM: 3.7
Samples: 4

Max nTPM: 5.2
Min nTPM: 2.0
Sample A Female 5.2
Sample B Female 3.7
Sample C Male 4.0
Sample D Male 2.0
Entorhinal cortex
nTPM: 2.8
Samples: 4

Max nTPM: 3.6
Min nTPM: 2.2
Sample A Female 2.5
Sample B Female 3.6
Sample C Male 2.9
Sample D Male 2.2
Subiculum
nTPM: 5.1
Samples: 4

Max nTPM: 6.2
Min nTPM: 3.9
Sample A Female 5.8
Sample B Female 6.2
Sample C Male 4.3
Sample D Male 3.9
Ventral hippocampus
nTPM: 4.5
Samples: 4

Max nTPM: 5.0
Min nTPM: 3.4
Sample A Female 5.0
Sample B Female 4.6
Sample C Male 4.9
Sample D Male 3.4

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 3.4
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 1.8
Samples: 4

Max nTPM: 2.7
Min nTPM: 1.2
Sample A Male 1.4
Sample B Male 1.2
Sample C Female 2.7
Sample D Female 1.9
Hippocampal formation
nTPM: 3.4
Samples: 4

Max nTPM: 4.2
Min nTPM: 2.5
Sample A Male 4.2
Sample B Male 3.6
Sample C Female 2.5
Sample D Female 3.2

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 0.8
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 0.8
68410393 Antisense, RP_041214_01_G09, Mouse strain C57BL/6J (56 days, male) 0.8

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The Human Protein Atlas

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