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MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:104.8 nTPM
HPA:104.8 nTPM
GTEx:81.1 nTPM
FANTOM5:163.9 Scaled Tags Per Million
Pig:127.8 nTPM
Mouse:318.5 nTPM
Allen mouse:13.9 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 104.8
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 88.8
2019 Male, age 18, unknown 103.6
1827 Male, age 72, unknown 99.9
2586 Male, age 75, left hemisphere 97.6
2411 Female, age 72, unknown 96.5
2666 Male, age 74, left hemisphere 87.6
2828 Female, age 72, unknown 86.3
1870 Female, age 42, unknown 86.0
1830 Male, age 51, unknown 77.8
1833 Male, age 53, unknown 76.9
2219 Male, age 76, both hemispheres 76.0
Dorsal raphe nucleus
nTPM: 87.1
2298 Female, age 72, unknown 104.1
2047 Male, age 72, unknown 88.5
1828 Male, age 53, unknown 85.6
2750 Male, age 76, both hemispheres 84.2
2016 Female, age 72, unknown 73.1
Inferior colliculus
nTPM: 87.5
2097 Female, age 72, unknown 101.0
1848 Female, age 42, unknown 89.0
1890 Male, age 53, unknown 81.8
2849 Male, age 72, unknown 78.0
Median raphe nucleus
nTPM: 90.4
2220 Male, age 76, midline 90.4
Pedunculopontine tegmental nucleus
nTPM: 83.8
1921 Female, age 85, both hemispheres 92.7
2334 Male, age 80, both hemispheres 86.3
2338 Male, age 61, both hemispheres 72.4
Periaquaductal grey, anterior
nTPM: 101.5
1947 Male, age 18, unknown 103.1
2502 Female, age 75, unknown 102.2
1795 Male, age 51, unknown 99.4
Periaquaductal grey, dorsal
nTPM: 81.8
1831 Male, age 72, unknown 84.6
1840 Male, age 53, unknown 84.5
2464 Female, age 72, unknown 83.3
2850 Male, age 76, both hemispheres 74.7
Periaquaductal grey, lateral
nTPM: 82.3
2272 Male, age 74, both hemispheres 89.3
2053 Male, age 18, unknown 84.6
2140 Male, age 76, both hemispheres 73.2
Pretectal area
nTPM: 104.8
1816 Male, age 51, unknown 136.7
1944 Female, age 72, unknown 131.6
2007 Male, age 72, unknown 126.1
1817 Female, age 42, unknown 121.4
1815 Male, age 53, unknown 109.6
2667 Female, age 75, unknown 100.6
2273 Male, age 74, both hemispheres 98.6
2224 Female, age 72, unknown 92.3
2407 Male, age 75, both hemispheres 80.7
2825 Male, age 18, unknown 80.1
2316 Male, age 76, right hemisphere 75.5
Red nucleus
nTPM: 80.3
2785 Male, age 18, unknown 96.6
1821 Female, age 72, unknown 89.2
2584 Male, age 75, left hemisphere 84.2
2725 Female, age 75, unknown 83.8
2503 Female, age 72, unknown 82.3
1954 Female, age 42, unknown 80.5
1865 Male, age 51, unknown 76.2
2227 Male, age 72, unknown 75.4
2769 Male, age 72, unknown 75.4
2588 Male, age 74, left hemisphere 74.6
1904 Male, age 53, unknown 73.7
2823 Male, age 76, right hemisphere 71.2
Substantia nigra
nTPM: 88.5
1941 Male, age 53, unknown 113.3
1889 Female, age 72, unknown 112.6
1916 Female, age 42, unknown 92.4
1851 Male, age 51, unknown 89.0
2241 Male, age 72, unknown 88.8
2409 Female, age 72, unknown 83.5
2583 Male, age 75, right hemisphere 83.3
2590 Female, age 75, unknown 78.4
2665 Male, age 74, both hemispheres 76.3
2699 Male, age 18, unknown 67.6
Superior colliculus
nTPM: 93.3
2087 Female, age 72, unknown 112.8
2261 Male, age 18, unknown 104.6
2668 Female, age 75, unknown 99.2
1796 Male, age 53, unknown 96.1
2664 Male, age 75, both hemispheres 95.1
2587 Male, age 74, left hemisphere 89.2
1895 Male, age 76, right hemisphere 87.8
1913 Female, age 42, unknown 85.7
1839 Male, age 51, unknown 84.6
1995 Male, age 72, unknown 78.4
Ventral tegmental area
nTPM: 84.6
2410 Female, age 72, unknown 96.1
1915 Female, age 42, unknown 86.3
2218 Male, age 76, both hemispheres 84.6
1942 Male, age 51, unknown 84.2
2223 Female, age 72, unknown 79.8
2021 Male, age 53, unknown 76.7

MIDBRAIN - GTEx RNA-seqi
Average nTPM 81.1
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 81.1
Samples: 139

Max nTPM: 279.6
Min nTPM: 45.0
Std nTPM: 30.2
Median nTPM: 73.6
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 279.6
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 227.4
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 161.5
GTEX-11DZ1-0011-R2a-SM-DNZZM 50-59 years, male 151.9
GTEX-QDT8-0011-R2A-SM-32PKQ 30-39 years, female 143.0
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 137.3
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 129.2
GTEX-Q2AG-0011-R2A-SM-2HMIT 40-49 years, female 124.8
GTEX-N7MS-0011-R2a-SM-2HML6 60-69 years, male 122.7
GTEX-1HFI6-0011-R2a-SM-CMKH5 40-49 years, male 120.6
GTEX-1B933-0011-R2b-SM-7IGNM 50-59 years, female 120.0
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 163.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 163.9
FF:10158-103A5 76 years, female 163.9

MIDBRAIN - Pig RNA-seqi
Average nTPM 127.8
Pig sample Sample description nTPM
Midbrain
nTPM: 108.8
Samples: 4

Max nTPM: 170.8
Min nTPM: 86.9
Sample A Female 86.9
Sample B Female 87.4
Sample C Male 170.8
Sample D Male 90.1
Periaqueductal gray
nTPM: 76.0
Samples: 3

Max nTPM: 83.6
Min nTPM: 70.1
Sample B Female 74.3
Sample C Male 83.6
Sample D Male 70.1
Substantia nigra
nTPM: 92.6
Samples: 4

Max nTPM: 112.4
Min nTPM: 72.1
Sample A Female 112.4
Sample B Female 84.0
Sample C Male 101.7
Sample D Male 72.1
Superior colliculi
nTPM: 127.9
Samples: 4

Max nTPM: 222.7
Min nTPM: 93.1
Sample A Female 94.1
Sample B Female 93.1
Sample C Male 222.7
Sample D Male 101.5

MIDBRAIN - Mouse RNA-seqi
Average nTPM 318.5
Mouse sample Sample description nTPM
Midbrain
nTPM: 318.5
Samples: 4

Max nTPM: 324.3
Min nTPM: 306.9
Sample A Male 306.9
Sample B Male 324.3
Sample C Female 319.7
Sample D Female 323.2

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 13.9
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 13.9
2159 Antisense, RP_040324_01_B05, Mouse strain C57BL/6J (56 days, male) 13.9
2160 Antisense, RP_040324_01_B05, Mouse strain C57BL/6J (56 days, male) 10.1

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The Human Protein Atlas

The Human Protein Atlas project is funded
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