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DOHH
MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:19.2 nTPM
HPA:19.2 nTPM
GTEx:30.7 nTPM
FANTOM5:13.8 Scaled Tags Per Million
Pig:6.7 nTPM
Mouse:16.0 nTPM
Allen mouse:5.6 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 19.2
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 17.1
2586 Male, age 75, left hemisphere 21.8
2666 Male, age 74, left hemisphere 18.8
2411 Female, age 72, unknown 18.5
2019 Male, age 18, unknown 18.2
1870 Female, age 42, unknown 16.4
2828 Female, age 72, unknown 16.3
1827 Male, age 72, unknown 16.2
1830 Male, age 51, unknown 16.2
1833 Male, age 53, unknown 16.0
2219 Male, age 76, both hemispheres 12.4
Dorsal raphe nucleus
nTPM: 13.8
1828 Male, age 53, unknown 15.0
2750 Male, age 76, both hemispheres 15.0
2298 Female, age 72, unknown 13.9
2047 Male, age 72, unknown 13.4
2016 Female, age 72, unknown 11.9
Inferior colliculus
nTPM: 14.1
1890 Male, age 53, unknown 14.7
1848 Female, age 42, unknown 14.2
2849 Male, age 72, unknown 13.9
2097 Female, age 72, unknown 13.7
Median raphe nucleus
nTPM: 12.1
2220 Male, age 76, midline 12.1
Pedunculopontine tegmental nucleus
nTPM: 14.4
2334 Male, age 80, both hemispheres 15.2
1921 Female, age 85, both hemispheres 14.1
2338 Male, age 61, both hemispheres 13.8
Periaquaductal grey, anterior
nTPM: 15.0
1795 Male, age 51, unknown 15.1
1947 Male, age 18, unknown 15.0
2502 Female, age 75, unknown 15.0
Periaquaductal grey, dorsal
nTPM: 12.1
2464 Female, age 72, unknown 14.0
1831 Male, age 72, unknown 12.4
1840 Male, age 53, unknown 12.1
2850 Male, age 76, both hemispheres 9.7
Periaquaductal grey, lateral
nTPM: 11.3
2053 Male, age 18, unknown 12.2
2272 Male, age 74, both hemispheres 11.2
2140 Male, age 76, both hemispheres 10.5
Pretectal area
nTPM: 14.8
2007 Male, age 72, unknown 19.2
1817 Female, age 42, unknown 16.1
1815 Male, age 53, unknown 15.9
1944 Female, age 72, unknown 15.8
1816 Male, age 51, unknown 15.6
2407 Male, age 75, both hemispheres 15.4
2825 Male, age 18, unknown 14.2
2316 Male, age 76, right hemisphere 14.1
2667 Female, age 75, unknown 13.3
2224 Female, age 72, unknown 12.4
2273 Male, age 74, both hemispheres 10.3
Red nucleus
nTPM: 19.2
2588 Male, age 74, left hemisphere 22.8
2725 Female, age 75, unknown 21.0
2503 Female, age 72, unknown 20.1
2785 Male, age 18, unknown 20.1
2227 Male, age 72, unknown 19.8
2769 Male, age 72, unknown 18.9
1821 Female, age 72, unknown 18.6
1904 Male, age 53, unknown 18.4
2823 Male, age 76, right hemisphere 18.2
2584 Male, age 75, left hemisphere 17.8
1865 Male, age 51, unknown 17.2
1954 Female, age 42, unknown 17.2
Substantia nigra
nTPM: 15.0
2583 Male, age 75, right hemisphere 17.7
1916 Female, age 42, unknown 16.5
1889 Female, age 72, unknown 16.2
1851 Male, age 51, unknown 15.8
2665 Male, age 74, both hemispheres 15.2
2590 Female, age 75, unknown 14.8
1941 Male, age 53, unknown 14.5
2409 Female, age 72, unknown 14.5
2699 Male, age 18, unknown 13.1
2241 Male, age 72, unknown 11.8
Superior colliculus
nTPM: 15.4
2664 Male, age 75, both hemispheres 17.2
1895 Male, age 76, right hemisphere 15.7
2668 Female, age 75, unknown 15.6
1796 Male, age 53, unknown 15.5
1913 Female, age 42, unknown 15.5
1995 Male, age 72, unknown 15.2
2587 Male, age 74, left hemisphere 15.1
1839 Male, age 51, unknown 15.0
2261 Male, age 18, unknown 14.6
2087 Female, age 72, unknown 14.3
Ventral tegmental area
nTPM: 14.6
2410 Female, age 72, unknown 16.6
1915 Female, age 42, unknown 15.7
1942 Male, age 51, unknown 14.8
2223 Female, age 72, unknown 14.0
2218 Male, age 76, both hemispheres 13.5
2021 Male, age 53, unknown 12.8

MIDBRAIN - GTEx RNA-seqi
Average nTPM 30.7
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 30.7
Samples: 139

Max nTPM: 91.7
Min nTPM: 11.1
Std nTPM: 14.0
Median nTPM: 28.3
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 91.7
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 90.7
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 89.9
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 83.2
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 74.2
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 58.9
GTEX-139TS-0011-R2b-SM-5J1MX 60-69 years, male 57.8
GTEX-1IY9M-0011-R2a-SM-D4P29 60-69 years, male 54.0
GTEX-1H1DG-0011-R2a-SM-ADEIQ 70-79 years, male 53.0
GTEX-ZDXO-0011-R2b-SM-4WKFG 60-69 years, male 51.9
GTEX-1GN1U-0011-R2a-SM-CL53A 50-59 years, female 50.1
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 13.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 13.8
FF:10158-103A5 76 years, female 13.8

MIDBRAIN - Pig RNA-seqi
Average nTPM 6.7
Pig sample Sample description nTPM
Midbrain
nTPM: 6.3
Samples: 4

Max nTPM: 6.8
Min nTPM: 5.6
Sample A Female 6.7
Sample B Female 5.6
Sample C Male 6.8
Sample D Male 6.2
Periaqueductal gray
nTPM: 4.9
Samples: 3

Max nTPM: 5.4
Min nTPM: 4.2
Sample B Female 5.0
Sample C Male 5.4
Sample D Male 4.2
Substantia nigra
nTPM: 5.9
Samples: 4

Max nTPM: 8.3
Min nTPM: 4.1
Sample A Female 8.3
Sample B Female 5.5
Sample C Male 5.6
Sample D Male 4.1
Superior colliculi
nTPM: 6.7
Samples: 4

Max nTPM: 9.0
Min nTPM: 5.5
Sample A Female 9.0
Sample B Female 5.7
Sample C Male 6.5
Sample D Male 5.5

MIDBRAIN - Mouse RNA-seqi
Average nTPM 16.0
Mouse sample Sample description nTPM
Midbrain
nTPM: 16.0
Samples: 4

Max nTPM: 20.8
Min nTPM: 12.9
Sample A Male 20.8
Sample B Male 12.9
Sample C Female 13.5
Sample D Female 16.8

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 5.6
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 5.6
413812 Antisense, RP_040809_01_F08, Mouse strain C57BL/6J (56 days, male) 5.6

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The Human Protein Atlas

The Human Protein Atlas project is funded
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