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MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:41.1 nTPM
HPA:41.1 nTPM
GTEx:20.3 nTPM
FANTOM5:45.1 Scaled Tags Per Million
Pig:7.5 nTPM
Mouse:3.2 nTPM
Allen mouse:1.6 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 41.1
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 39.2
2586 Male, age 75, left hemisphere 49.0
2828 Female, age 72, unknown 40.4
1827 Male, age 72, unknown 40.0
2666 Male, age 74, left hemisphere 40.0
2219 Male, age 76, both hemispheres 39.8
1870 Female, age 42, unknown 37.3
1833 Male, age 53, unknown 37.1
2411 Female, age 72, unknown 37.0
1830 Male, age 51, unknown 36.1
2019 Male, age 18, unknown 35.7
Dorsal raphe nucleus
nTPM: 37.4
2750 Male, age 76, both hemispheres 40.0
2298 Female, age 72, unknown 38.8
2047 Male, age 72, unknown 38.0
1828 Male, age 53, unknown 35.8
2016 Female, age 72, unknown 34.4
Inferior colliculus
nTPM: 35.8
2849 Male, age 72, unknown 36.8
1848 Female, age 42, unknown 36.5
1890 Male, age 53, unknown 35.1
2097 Female, age 72, unknown 34.7
Median raphe nucleus
nTPM: 41.1
2220 Male, age 76, midline 41.1
Pedunculopontine tegmental nucleus
nTPM: 37.4
2334 Male, age 80, both hemispheres 39.2
2338 Male, age 61, both hemispheres 36.9
1921 Female, age 85, both hemispheres 36.2
Periaquaductal grey, anterior
nTPM: 41.1
1795 Male, age 51, unknown 43.8
1947 Male, age 18, unknown 40.3
2502 Female, age 75, unknown 39.3
Periaquaductal grey, dorsal
nTPM: 35.6
1831 Male, age 72, unknown 36.9
1840 Male, age 53, unknown 36.4
2850 Male, age 76, both hemispheres 34.8
2464 Female, age 72, unknown 34.2
Periaquaductal grey, lateral
nTPM: 36.3
2272 Male, age 74, both hemispheres 37.1
2053 Male, age 18, unknown 36.6
2140 Male, age 76, both hemispheres 35.0
Pretectal area
nTPM: 39.1
2407 Male, age 75, both hemispheres 42.2
1816 Male, age 51, unknown 42.0
2007 Male, age 72, unknown 41.9
1815 Male, age 53, unknown 39.8
1944 Female, age 72, unknown 39.8
1817 Female, age 42, unknown 38.9
2667 Female, age 75, unknown 38.7
2825 Male, age 18, unknown 38.5
2224 Female, age 72, unknown 36.8
2316 Male, age 76, right hemisphere 36.7
2273 Male, age 74, both hemispheres 35.1
Red nucleus
nTPM: 37.0
2584 Male, age 75, left hemisphere 42.3
2785 Male, age 18, unknown 39.6
2725 Female, age 75, unknown 38.0
2769 Male, age 72, unknown 37.7
2227 Male, age 72, unknown 37.6
2823 Male, age 76, right hemisphere 36.9
1904 Male, age 53, unknown 36.2
1954 Female, age 42, unknown 35.5
2503 Female, age 72, unknown 35.3
2588 Male, age 74, left hemisphere 35.2
1865 Male, age 51, unknown 35.0
1821 Female, age 72, unknown 34.4
Substantia nigra
nTPM: 39.8
2583 Male, age 75, right hemisphere 47.3
1916 Female, age 42, unknown 43.8
2665 Male, age 74, both hemispheres 41.0
2590 Female, age 75, unknown 40.8
1851 Male, age 51, unknown 39.5
1941 Male, age 53, unknown 39.3
2699 Male, age 18, unknown 38.4
1889 Female, age 72, unknown 37.4
2409 Female, age 72, unknown 37.3
2241 Male, age 72, unknown 33.3
Superior colliculus
nTPM: 38.9
1796 Male, age 53, unknown 44.5
2664 Male, age 75, both hemispheres 42.5
2261 Male, age 18, unknown 41.3
2087 Female, age 72, unknown 38.8
2668 Female, age 75, unknown 38.2
1913 Female, age 42, unknown 37.8
1839 Male, age 51, unknown 37.1
1995 Male, age 72, unknown 36.9
2587 Male, age 74, left hemisphere 36.5
1895 Male, age 76, right hemisphere 35.0
Ventral tegmental area
nTPM: 38.9
2223 Female, age 72, unknown 40.8
1942 Male, age 51, unknown 40.6
2218 Male, age 76, both hemispheres 39.0
1915 Female, age 42, unknown 38.8
2021 Male, age 53, unknown 37.3
2410 Female, age 72, unknown 36.8

MIDBRAIN - GTEx RNA-seqi
Average nTPM 20.3
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 20.3
Samples: 139

Max nTPM: 37.1
Min nTPM: 7.3
Std nTPM: 5.9
Median nTPM: 19.7
GTEX-13OW8-0011-R2a-SM-5L3G2 60-69 years, male 37.1
GTEX-1HB9E-0011-R2b-SM-A96RW 50-59 years, male 35.0
GTEX-13OW6-0011-R2a-SM-5L3HG 50-59 years, male 32.2
GTEX-NL4W-0011-R2a-SM-2I5GV 50-59 years, male 31.8
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 31.6
GTEX-15DYW-0011-R2b-SM-7KUKY 60-69 years, female 30.8
GTEX-OXRO-0011-R2A-SM-3NB1W 60-69 years, female 30.3
GTEX-1GN73-0011-R2a-SM-CJI2V 60-69 years, male 30.1
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 29.8
GTEX-17HG3-0011-R2a-SM-7MGVX 30-39 years, female 29.5
GTEX-12WSD-0011-R2a-SM-5LZWB 60-69 years, female 29.2
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 45.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 45.1
FF:10158-103A5 76 years, female 45.1

MIDBRAIN - Pig RNA-seqi
Average nTPM 7.5
Pig sample Sample description nTPM
Midbrain
nTPM: 7.6
Samples: 4

Max nTPM: 9.6
Min nTPM: 5.7
Sample A Female 5.8
Sample B Female 5.7
Sample C Male 9.6
Sample D Male 9.1
Periaqueductal gray
nTPM: 6.7
Samples: 3

Max nTPM: 7.2
Min nTPM: 6.0
Sample B Female 6.0
Sample C Male 7.2
Sample D Male 6.9
Substantia nigra
nTPM: 6.7
Samples: 4

Max nTPM: 8.4
Min nTPM: 5.4
Sample A Female 7.2
Sample B Female 5.4
Sample C Male 8.4
Sample D Male 5.8
Superior colliculi
nTPM: 6.8
Samples: 4

Max nTPM: 7.7
Min nTPM: 5.1
Sample A Female 7.2
Sample B Female 5.1
Sample C Male 7.7
Sample D Male 7.2

MIDBRAIN - Mouse RNA-seqi
Average nTPM 3.2
Mouse sample Sample description nTPM
Midbrain
nTPM: 3.2
Samples: 4

Max nTPM: 4.4
Min nTPM: 2.2
Sample A Male 4.4
Sample B Male 2.2
Sample C Female 2.2
Sample D Female 3.9

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 1.6
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 1.6
76003512 Antisense, RP_060608_02_E05, Mouse strain C57BL/6J (56 days, male) 1.6

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The Human Protein Atlas

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