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HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: Not detected
Neuronal cells: Low
RNA expressioni
Consensus:13.6 nTPM
HPA:13.6 nTPM
GTEx:15.6 nTPM
FANTOM5:44.4 Scaled Tags Per Million
Pig:35.4 nTPM
Mouse:24.3 nTPM
Allen mouse:6.7 Expression energy

HIPPOCAMPUS - Antibody stainingi
Antibody HPA019219
Glial cells Not detected
Neuronal cells Low



HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 13.6
Sample id Sample description nTPM
Hippocampus
nTPM: 11.8
2621 Female, age 67, right hemisphere 13.3
2529 Female, age 94, left hemisphere 12.7
1898 Male, age 80, left hemisphere 12.6
2148 Female, age 91, left hemisphere 12.2
1855 Male, age 76, left hemisphere 11.1
1911 Female, age 85, right hemisphere 9.1
Dentate gyrus
nTPM: 12.6
2531 Female, age 67, both hemispheres 15.4
2530 Female, age 94, left hemisphere 13.9
1927 Female, age 91, both hemispheres 13.3
2010 Male, age 76, both hemispheres 11.7
2528 Male, age 74, both hemispheres 11.1
2246 Female, age 85, both hemispheres 10.3
Entorhinal gyrus
nTPM: 13.6
2764 Male, age 80, right hemisphere 15.9
2613 Female, age 94, left hemisphere 14.5
2686 Male, age 75, right hemisphere 14.4
1938 Female, age 85, left hemisphere 13.3
2117 Female, age 91, right hemisphere 12.1
1787 Male, age 76, left hemisphere 11.6
Hippocampus, CA1
nTPM: 11.8
2749 Male, age 80, left hemisphere 14.9
2045 Male, age 76, both hemispheres 12.5
1873 Female, age 85, both hemispheres 12.4
2082 Female, age 91, right hemisphere 9.9
2527 Male, age 74, both hemispheres 9.2
Hippocampus, CA2
nTPM: 11.5
1963 Male, age 80, left hemisphere 14.3
1892 Male, age 76, both hemispheres 14.2
2437 Female, age 94, left hemisphere 12.2
2113 Female, age 91, right hemisphere 10.6
1940 Female, age 85, left hemisphere 9.5
2249 Male, age 74, both hemispheres 8.2
Hippocampus, CA3
nTPM: 12.3
2620 Female, age 94, left hemisphere 14.3
2861 Female, age 67, both hemispheres 13.0
1891 Female, age 85, both hemispheres 12.8
2137 Male, age 80, left hemisphere 12.8
1867 Male, age 76, both hemispheres 12.2
2436 Male, age 74, both hemispheres 8.8
Parahippocampal cortex
nTPM: 12.3
1850 Male, age 80, both hemispheres 15.6
2532 Female, age 72, left hemisphere 14.6
1990 Female, age 91, right hemisphere 14.3
2692 Male, age 74, both hemispheres 14.1
2693 Female, age 94, both hemispheres 12.4
2245 Female, age 91, both hemispheres 11.8
1933 Female, age 85, both hemispheres 11.6
2622 Female, age 67, right hemisphere 11.4
2018 Male, age 76, both hemispheres 9.1
2250 Female, age 67, right hemisphere 7.9
Perirhinal gyrus
nTPM: 13.1
1794 Male, age 80, right hemisphere 14.4
2848 Male, age 76, right hemisphere 13.6
1847 Female, age 91, left hemisphere 13.2
1841 Female, age 85, right hemisphere 12.8
2521 Female, age 94, right hemisphere 11.6
Subiculum
nTPM: 12.5
2438 Female, age 94, left hemisphere 13.8
1901 Male, age 80, both hemispheres 13.2
1977 Female, age 85, both hemispheres 13.1
2042 Male, age 76, both hemispheres 12.9
2619 Male, age 74, both hemispheres 11.7
2729 Female, age 91, right hemisphere 10.3

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 15.6
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 15.6
Samples: 197

Max nTPM: 27.7
Min nTPM: 9.1
Std nTPM: 3.0
Median nTPM: 15.4
GTEX-13QIC-0011-R1a-SM-5O9CJ 60-69 years, female 27.7
GTEX-1H23P-0011-R1a-SM-ACKVC 60-69 years, male 24.7
GTEX-13QJC-0011-R1b-SM-5S2UU 60-69 years, female 23.8
GTEX-13NZ8-0011-R1b-SM-5KM3V 60-69 years, female 23.0
GTEX-18A6Q-0011-R1b-SM-731DI 60-69 years, male 23.0
GTEX-13RTJ-0011-R1a-SM-5O9D9 60-69 years, male 22.5
GTEX-UTHO-0011-R1A-SM-3GIJO 60-69 years, male 22.5
GTEX-13JUV-0011-R1a-SM-5LZY4 40-49 years, female 21.3
GTEX-13O3O-0011-R1b-SM-5KM2K 60-69 years, female 21.3
GTEX-14LZ3-0011-R1a-SM-69LP5 60-69 years, female 21.2
GTEX-NPJ8-0011-R1a-SM-33HCB 40-49 years, male 21.2
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 44.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 44.4
FF:10153-102I9 76 years, female 56.4
FF:10169-103B7 60 years, female 32.4

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 35.4
Pig sample Sample description nTPM
Dorsal hippocampus
nTPM: 34.4
Samples: 4

Max nTPM: 39.6
Min nTPM: 26.3
Sample A Female 39.6
Sample B Female 34.8
Sample C Male 37.0
Sample D Male 26.3
Entorhinal cortex
nTPM: 35.4
Samples: 4

Max nTPM: 38.7
Min nTPM: 33.6
Sample A Female 38.7
Sample B Female 33.6
Sample C Male 34.5
Sample D Male 34.9
Subiculum
nTPM: 34.8
Samples: 4

Max nTPM: 41.3
Min nTPM: 31.0
Sample A Female 41.3
Sample B Female 31.0
Sample C Male 35.4
Sample D Male 31.5
Ventral hippocampus
nTPM: 35.1
Samples: 4

Max nTPM: 42.5
Min nTPM: 28.1
Sample A Female 32.5
Sample B Female 28.1
Sample C Male 42.5
Sample D Male 37.1

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 24.3
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 24.3
Samples: 4

Max nTPM: 30.1
Min nTPM: 21.4
Sample A Male 23.5
Sample B Male 22.3
Sample C Female 21.4
Sample D Female 30.1
Hippocampal formation
nTPM: 24.2
Samples: 4

Max nTPM: 28.4
Min nTPM: 19.4
Sample A Male 19.4
Sample B Male 26.3
Sample C Female 28.4
Sample D Female 22.6

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 6.7
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 6.7
70194528 Antisense, RP_050517_01_E11, Mouse strain C57BL/6J (56 days, male) 7.0
74750010 Antisense, RP_060220_04_F12, Mouse strain C57BL/6J (56 days, male) 6.5

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.