ABOUTMENU
HELP
NEWS
HIGD1B
BASAL GANGLIA - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:71.0 nTPM
HPA:71.0 nTPM
GTEx:49.8 nTPM
FANTOM5:8.0 Scaled Tags Per Million
Pig:1.2 nTPM
Mouse:10.5 nTPM
Allen mouse:0.8 Expression energy

BASAL GANGLIA - Annotated protein expression
Pending normal tissue analysis

BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 71.0
Sample id Sample description nTPM
Caudate nucleus
nTPM: 70.2
2288 Male, age 75, left hemisphere 71.6
2846 Female, age 79, unknown 71.4
2481 Female, age 94, left hemisphere 70.8
1857 Female, age 85, left hemisphere 70.6
2290 Female, age 72, unknown 70.0
2289 Male, age 61, right hemisphere 69.7
1854 Male, age 80, left hemisphere 69.4
1781 Male, age 74, unknown 68.3
Claustrum
nTPM: 68.7
2568 Male, age 61, both hemispheres 70.4
2645 Female, age 72, unknown 69.7
2392 Female, age 94, both hemispheres 68.6
2196 Female, age 79, unknown 68.5
1956 Male, age 74, unknown 68.4
2198 Male, age 80, both hemispheres 68.3
2292 Female, age 85, both hemispheres 68.2
2284 Female, age 91, both hemispheres 68.0
2491 Male, age 75, both hemispheres 67.9
Globus pallidus, externus
nTPM: 69.7
2646 Male, age 61, right hemisphere 72.2
2772 Female, age 79, unknown 70.0
2567 Female, age 72, unknown 69.7
1996 Male, age 80, right hemisphere 68.9
2395 Male, age 75, both hemispheres 67.7
Globus pallidus, internus
nTPM: 69.6
2483 Female, age 94, right hemisphere 72.6
1818 Male, age 74, unknown 70.9
2037 Male, age 80, right hemisphere 69.4
2287 Male, age 75, right hemisphere 69.1
2778 Female, age 91, both hemispheres 69.1
2111 Female, age 85, right hemisphere 68.3
2566 Female, age 72, unknown 68.0
Nucleus accumbens
nTPM: 68.8
2286 Male, age 75, left hemisphere 71.5
1783 Male, age 74, unknown 69.2
1806 Female, age 85, left hemisphere 69.0
2391 Female, age 94, left hemisphere 69.0
2824 Male, age 61, right hemisphere 68.9
2698 Female, age 72, unknown 68.2
1856 Female, age 91, right hemisphere 67.1
2732 Male, age 80, right hemisphere 67.1
Nucleus basalis of Meynert
nTPM: 71.0
2569 Male, age 61, both hemispheres 74.0
2484 Female, age 94, left hemisphere 72.0
2821 Male, age 75, both hemispheres 69.1
2393 Male, age 80, right hemisphere 68.9
Nucleus of the diagonal band
nTPM: 67.0
2029 Male, age 61, right hemisphere 67.9
1979 Male, age 74, unknown 67.1
1812 Female, age 91, both hemispheres 66.8
2195 Female, age 85, both hemispheres 66.6
2775 Male, age 80, right hemisphere 66.5
Olfactory tubercle
nTPM: 67.1
2856 Male, age 75, right hemisphere 68.4
1998 Female, age 91, both hemispheres 68.2
1846 Male, age 80, right hemisphere 66.6
2487 Female, age 94, left hemisphere 65.5
Putamen
nTPM: 70.5
2647 Male, age 75, left hemisphere 72.6
2466 Female, age 79, unknown 71.3
2489 Female, age 72, unknown 71.2
1838 Male, age 80, right hemisphere 70.6
2482 Female, age 94, left hemisphere 70.5
1829 Male, age 74, unknown 68.8
1937 Female, age 91, right hemisphere 68.6
Septal nuclei
nTPM: 67.3
2394 Male, age 61, left hemisphere 68.6
2031 Female, age 72, unknown 68.1
2199 Male, age 80, right hemisphere 67.7
1960 Male, age 74, unknown 67.5
2059 Female, age 85, both hemispheres 67.2
2009 Female, age 91, both hemispheres 66.4
2629 Female, age 94, right hemisphere 65.6

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 49.8
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 39.1
Samples: 246

Max nTPM: 152.8
Min nTPM: 8.0
Std nTPM: 25.6
Median nTPM: 29.9
GTEX-1CAV2-0011-R5b-SM-9QEH4 40-49 years, female 152.8
GTEX-11UD1-0011-R5b-SM-5P9FP 40-49 years, female 152.7
GTEX-145MG-0011-R5b-SM-5S2VU 50-59 years, male 131.7
GTEX-1EN7A-0011-R5a-SM-9QEH6 40-49 years, male 131.4
GTEX-S7PM-0011-R5A-SM-3NM8G 60-69 years, male 126.4
GTEX-1HR9M-0011-R5a-SM-ARU72 60-69 years, male 113.6
GTEX-1C6VR-0011-R5a-SM-9QEH1 60-69 years, male 101.9
GTEX-1F52S-0011-R5a-SM-CJI22 60-69 years, female 100.5
GTEX-13NZA-0011-R5b-SM-5KM4K 60-69 years, male 100.3
GTEX-1GPI6-0011-R5a-SM-CJI2W 60-69 years, male 98.7
GTEX-13CF2-0011-R5a-SM-5LZWS 60-69 years, male 95.6
Show allShow less
Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 28.3
Samples: 246

Max nTPM: 135.0
Min nTPM: 5.1
Std nTPM: 22.2
Median nTPM: 20.9
GTEX-13PDP-0011-R6b-SM-5O9D5 60-69 years, male 135.0
GTEX-S7PM-0011-R6A-SM-3NM8F 60-69 years, male 114.5
GTEX-X4XY-0011-R6B-SM-46MVB 60-69 years, male 112.8
GTEX-1E2YA-0011-R6b-SM-CE6R2 50-59 years, male 109.4
GTEX-ZV68-0011-R6a-SM-51MSR 50-59 years, female 97.9
GTEX-16Z82-0011-R6a-SM-7IGLV 60-69 years, male 92.3
GTEX-1IGQW-0011-R6a-SM-CM2TC 60-69 years, male 89.3
GTEX-1HBPM-0011-R6b-SM-ARU73 60-69 years, female 88.4
GTEX-131XW-0011-R6b-SM-5K7XY 50-59 years, female 87.9
GTEX-1EWIQ-0011-R6a-SM-ARU8G 70-79 years, female 86.8
GTEX-139TS-0011-R6a-SM-5J2OB 60-69 years, male 84.8
Show allShow less
Brain - Putamen (basal ganglia)
Average nTPM: 49.8
Samples: 205

Max nTPM: 170.1
Min nTPM: 7.5
Std nTPM: 31.1
Median nTPM: 39.4
GTEX-1F75B-0011-R7a-SM-ARU84 50-59 years, male 170.1
GTEX-1EN7A-0011-R7b-SM-9QEHX 40-49 years, male 165.2
GTEX-1F52S-0011-R7b-SM-9QEH8 60-69 years, female 152.9
GTEX-144GO-0011-R7b-SM-5S2TT 60-69 years, male 152.8
GTEX-ZV68-0011-R7a-SM-51MT4 50-59 years, female 129.0
GTEX-11WQC-0011-R7b-SM-5BC7A 60-69 years, male 126.6
GTEX-139TS-0011-R7a-SM-5K7X7 60-69 years, male 126.6
GTEX-12WSE-0011-R7a-SM-5PNWF 20-29 years, male 125.6
GTEX-1E2YA-0011-R7a-SM-CJI1Z 50-59 years, male 121.3
GTEX-1C64N-0011-R7a-SM-7IGOI 50-59 years, male 119.0
GTEX-1H4P4-0011-R7b-SM-ARU77 50-59 years, male 117.7
Show allShow less

BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 8.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 8.0
FF:10164-103B2 76 years, female 8.0
Globus pallidus
Scaled Tags Per Million: 5.6
FF:10161-103A8 76 years, female 8.8
FF:10175-103C4 60 years, female 2.3
Nucleus accumbens
Scaled Tags Per Million: 6.0
FF:10037-101F1 23-56 years, mixed 6.0
Putamen
Scaled Tags Per Million: 5.2
FF:10176-103C5 60 years, female 5.2

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 1.2
Pig sample Sample description nTPM
Caudate
nTPM: 1.0
Samples: 4

Max nTPM: 1.1
Min nTPM: 0.7
Sample A Female 0.7
Sample B Female 1.0
Sample C Male 1.1
Sample D Male 1.0
Putamen
nTPM: 1.2
Samples: 4

Max nTPM: 1.5
Min nTPM: 0.6
Sample A Female 0.6
Sample B Female 1.4
Sample C Male 1.5
Sample D Male 1.2
Septum
nTPM: 0.7
Samples: 4

Max nTPM: 0.9
Min nTPM: 0.4
Sample A Female 0.7
Sample B Female 0.8
Sample C Male 0.9
Sample D Male 0.4
Ventral pallidum
nTPM: 0.8
Samples: 4

Max nTPM: 1.2
Min nTPM: 0.5
Sample A Female 0.5
Sample B Female 1.2
Sample C Male 0.9
Sample D Male 0.5

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 10.5
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 10.5
Samples: 4

Max nTPM: 12.8
Min nTPM: 8.8
Sample A Male 8.8
Sample B Male 9.4
Sample C Female 12.8
Sample D Female 11.1
Septum
nTPM: 7.0
Samples: 4

Max nTPM: 7.4
Min nTPM: 6.5
Sample A Male 7.0
Sample B Male 7.4
Sample C Female 7.1
Sample D Female 6.5
Ventral forebrain
nTPM: 8.2
Samples: 4

Max nTPM: 10.3
Min nTPM: 7.0
Sample A Male 7.0
Sample B Male 7.1
Sample C Female 10.3
Sample D Female 8.4

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 0.8
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 0.8
71616335 Antisense, RP_050927_02_F10, Mouse strain C57BL/6J (56 days, male) 0.8
Pallidum
Expression energy: 0.6
71616335 Antisense, RP_050927_02_F10, Mouse strain C57BL/6J (56 days, male) 0.6

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.