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HIGD1B
MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:70.9 nTPM
HPA:70.9 nTPM
GTEx:45.2 nTPM
FANTOM5:9.5 Scaled Tags Per Million
Pig:1.3 nTPM
Mouse:7.9 nTPM
Allen mouse:0.7 Expression energy

MIDBRAIN - Annotated protein expression
Pending normal tissue analysis

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 70.9
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 69.2
2666 Male, age 74, left hemisphere 71.0
2019 Male, age 18, unknown 70.8
1870 Female, age 42, unknown 70.2
2219 Male, age 76, both hemispheres 70.1
2828 Female, age 72, unknown 69.6
2411 Female, age 72, unknown 69.1
1833 Male, age 53, unknown 68.4
1830 Male, age 51, unknown 68.3
1827 Male, age 72, unknown 68.0
2586 Male, age 75, left hemisphere 66.2
Dorsal raphe nucleus
nTPM: 68.5
1828 Male, age 53, unknown 69.2
2750 Male, age 76, both hemispheres 68.9
2016 Female, age 72, unknown 68.7
2047 Male, age 72, unknown 68.6
2298 Female, age 72, unknown 67.2
Inferior colliculus
nTPM: 69.1
1890 Male, age 53, unknown 70.6
2097 Female, age 72, unknown 69.9
1848 Female, age 42, unknown 68.6
2849 Male, age 72, unknown 67.2
Median raphe nucleus
nTPM: 67.8
2220 Male, age 76, midline 67.8
Pedunculopontine tegmental nucleus
nTPM: 68.5
2334 Male, age 80, both hemispheres 68.8
1921 Female, age 85, both hemispheres 68.5
2338 Male, age 61, both hemispheres 68.4
Periaquaductal grey, anterior
nTPM: 68.0
1947 Male, age 18, unknown 68.8
2502 Female, age 75, unknown 68.0
1795 Male, age 51, unknown 67.1
Periaquaductal grey, dorsal
nTPM: 67.8
2464 Female, age 72, unknown 68.7
2850 Male, age 76, both hemispheres 67.9
1831 Male, age 72, unknown 67.3
1840 Male, age 53, unknown 67.3
Periaquaductal grey, lateral
nTPM: 67.5
2053 Male, age 18, unknown 67.6
2140 Male, age 76, both hemispheres 67.5
2272 Male, age 74, both hemispheres 67.4
Pretectal area
nTPM: 68.6
2007 Male, age 72, unknown 70.7
1817 Female, age 42, unknown 70.2
2667 Female, age 75, unknown 70.0
1816 Male, age 51, unknown 69.5
2316 Male, age 76, right hemisphere 69.4
1815 Male, age 53, unknown 68.9
1944 Female, age 72, unknown 68.8
2825 Male, age 18, unknown 67.7
2224 Female, age 72, unknown 67.5
2273 Male, age 74, both hemispheres 66.8
2407 Male, age 75, both hemispheres 65.3
Red nucleus
nTPM: 70.9
1954 Female, age 42, unknown 73.7
2227 Male, age 72, unknown 72.8
2588 Male, age 74, left hemisphere 72.5
2769 Male, age 72, unknown 71.5
1821 Female, age 72, unknown 71.4
2823 Male, age 76, right hemisphere 71.4
1904 Male, age 53, unknown 71.3
2503 Female, age 72, unknown 70.9
1865 Male, age 51, unknown 70.6
2785 Male, age 18, unknown 69.7
2725 Female, age 75, unknown 68.1
2584 Male, age 75, left hemisphere 66.4
Substantia nigra
nTPM: 69.1
2409 Female, age 72, unknown 73.7
2665 Male, age 74, both hemispheres 72.4
1851 Male, age 51, unknown 69.4
1889 Female, age 72, unknown 69.2
1916 Female, age 42, unknown 69.0
2241 Male, age 72, unknown 69.0
2699 Male, age 18, unknown 67.7
1941 Male, age 53, unknown 67.5
2590 Female, age 75, unknown 67.0
2583 Male, age 75, right hemisphere 66.4
Superior colliculus
nTPM: 68.4
2668 Female, age 75, unknown 71.2
1895 Male, age 76, right hemisphere 70.9
2087 Female, age 72, unknown 69.4
2587 Male, age 74, left hemisphere 69.4
1839 Male, age 51, unknown 68.1
2261 Male, age 18, unknown 68.1
1995 Male, age 72, unknown 67.3
1796 Male, age 53, unknown 67.2
1913 Female, age 42, unknown 67.1
2664 Male, age 75, both hemispheres 65.6
Ventral tegmental area
nTPM: 68.4
2021 Male, age 53, unknown 68.8
1915 Female, age 42, unknown 68.6
2218 Male, age 76, both hemispheres 68.4
2410 Female, age 72, unknown 68.4
1942 Male, age 51, unknown 68.3
2223 Female, age 72, unknown 67.8

MIDBRAIN - GTEx RNA-seqi
Average nTPM 45.2
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 45.2
Samples: 139

Max nTPM: 140.0
Min nTPM: 6.8
Std nTPM: 28.8
Median nTPM: 36.7
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 140.0
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 133.8
GTEX-YJ89-0011-R2b-SM-4RGLT 60-69 years, male 125.0
GTEX-12WSD-0011-R2a-SM-5LZWB 60-69 years, female 122.5
GTEX-1IL2U-0011-R2a-SM-ARU6V 60-69 years, male 122.4
GTEX-13PDP-0011-R2b-SM-5O9DH 60-69 years, male 117.2
GTEX-11EMC-0011-R2b-SM-DO114 60-69 years, female 116.1
GTEX-1GN2E-0011-R2a-SM-9WG7D 60-69 years, male 116.0
GTEX-ZV68-0011-R2a-SM-4YCDK 50-59 years, female 115.2
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 99.7
GTEX-1A8G7-0011-R2a-SM-7IGQI 60-69 years, male 99.0
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 9.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 9.5
FF:10158-103A5 76 years, female 9.5

MIDBRAIN - Pig RNA-seqi
Average nTPM 1.3
Pig sample Sample description nTPM
Midbrain
nTPM: 1.1
Samples: 4

Max nTPM: 1.4
Min nTPM: 0.8
Sample A Female 1.2
Sample B Female 0.8
Sample C Male 1.4
Sample D Male 1.0
Periaqueductal gray
nTPM: 0.7
Samples: 3

Max nTPM: 0.9
Min nTPM: 0.5
Sample B Female 0.8
Sample C Male 0.9
Sample D Male 0.5
Substantia nigra
nTPM: 1.1
Samples: 4

Max nTPM: 1.7
Min nTPM: 0.7
Sample A Female 1.2
Sample B Female 1.7
Sample C Male 0.7
Sample D Male 0.8
Superior colliculi
nTPM: 1.3
Samples: 4

Max nTPM: 1.7
Min nTPM: 1.1
Sample A Female 1.3
Sample B Female 1.2
Sample C Male 1.1
Sample D Male 1.7

MIDBRAIN - Mouse RNA-seqi
Average nTPM 7.9
Mouse sample Sample description nTPM
Midbrain
nTPM: 7.9
Samples: 4

Max nTPM: 8.3
Min nTPM: 7.5
Sample A Male 7.7
Sample B Male 7.5
Sample C Female 8.1
Sample D Female 8.3

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.7
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.7
71616335 Antisense, RP_050927_02_F10, Mouse strain C57BL/6J (56 days, male) 0.7

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.