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BASAL GANGLIA - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:11.9 nTPM
HPA:11.9 nTPM
GTEx:33.7 nTPM
FANTOM5:71.9 Scaled Tags Per Million
Pig:19.3 nTPM
Mouse:5.7 nTPM

BASAL GANGLIA - Annotated protein expression
Pending normal tissue analysis

CAUDATE - Antibody stainingi
Antibody HPA046636
Glial cells Medium
Neuronal cells High



BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 11.9
Sample id Sample description nTPM
Caudate nucleus
nTPM: 11.9
2290 Female, age 72, unknown 18.7
2289 Male, age 61, right hemisphere 17.2
2288 Male, age 75, left hemisphere 12.4
2846 Female, age 79, unknown 11.5
1857 Female, age 85, left hemisphere 11.2
1854 Male, age 80, left hemisphere 9.8
1781 Male, age 74, unknown 8.4
2481 Female, age 94, left hemisphere 5.9
Claustrum
nTPM: 5.6
2491 Male, age 75, both hemispheres 7.7
2196 Female, age 79, unknown 7.3
2568 Male, age 61, both hemispheres 7.2
2645 Female, age 72, unknown 6.8
2284 Female, age 91, both hemispheres 6.4
2198 Male, age 80, both hemispheres 6.1
2292 Female, age 85, both hemispheres 4.5
1956 Male, age 74, unknown 3.6
2392 Female, age 94, both hemispheres 0.7
Globus pallidus, externus
nTPM: 0.8
2646 Male, age 61, right hemisphere 3.1
2772 Female, age 79, unknown 0.6
2567 Female, age 72, unknown 0.3
1996 Male, age 80, right hemisphere 0.0
2395 Male, age 75, both hemispheres 0.0
Globus pallidus, internus
nTPM: 0.4
2483 Female, age 94, right hemisphere 1.8
2566 Female, age 72, unknown 0.5
2111 Female, age 85, right hemisphere 0.4
1818 Male, age 74, unknown 0.0
2037 Male, age 80, right hemisphere 0.0
2287 Male, age 75, right hemisphere 0.0
2778 Female, age 91, both hemispheres 0.0
Nucleus accumbens
nTPM: 10.3
1783 Male, age 74, unknown 16.4
1806 Female, age 85, left hemisphere 15.0
2824 Male, age 61, right hemisphere 12.7
1856 Female, age 91, right hemisphere 11.3
2286 Male, age 75, left hemisphere 9.4
2698 Female, age 72, unknown 9.4
2732 Male, age 80, right hemisphere 8.0
2391 Female, age 94, left hemisphere 0.5
Nucleus basalis of Meynert
nTPM: 7.2
2484 Female, age 94, left hemisphere 12.6
2569 Male, age 61, both hemispheres 7.3
2393 Male, age 80, right hemisphere 4.7
2821 Male, age 75, both hemispheres 4.2
Nucleus of the diagonal band
nTPM: 8.2
1979 Male, age 74, unknown 13.2
2195 Female, age 85, both hemispheres 10.1
2029 Male, age 61, right hemisphere 7.1
2775 Male, age 80, right hemisphere 6.8
1812 Female, age 91, both hemispheres 3.8
Olfactory tubercle
nTPM: 5.4
2487 Female, age 94, left hemisphere 7.6
1998 Female, age 91, both hemispheres 5.9
2856 Male, age 75, right hemisphere 4.6
1846 Male, age 80, right hemisphere 3.5
Putamen
nTPM: 11.2
2489 Female, age 72, unknown 15.2
2466 Female, age 79, unknown 13.7
2647 Male, age 75, left hemisphere 12.5
1838 Male, age 80, right hemisphere 11.9
1829 Male, age 74, unknown 9.5
1937 Female, age 91, right hemisphere 8.4
2482 Female, age 94, left hemisphere 7.0
Septal nuclei
nTPM: 7.9
1960 Male, age 74, unknown 14.2
2059 Female, age 85, both hemispheres 11.7
2199 Male, age 80, right hemisphere 8.5
2031 Female, age 72, unknown 6.9
2009 Female, age 91, both hemispheres 5.1
2394 Male, age 61, left hemisphere 4.6
2629 Female, age 94, right hemisphere 4.5

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 33.7
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 27.9
Samples: 246

Max nTPM: 62.4
Min nTPM: 4.4
Std nTPM: 11.7
Median nTPM: 26.9
GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 62.4
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 61.7
GTEX-1HBPI-0011-R5a-SM-CKZOW 50-59 years, male 58.0
GTEX-1B996-0011-R5a-SM-7P8PN 60-69 years, male 55.7
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 55.6
GTEX-1J8Q2-0011-R5b-SM-A9SKH 60-69 years, male 53.6
GTEX-1F75W-0011-R5b-SM-9QEGV 60-69 years, male 52.9
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 52.8
GTEX-1F7RK-0011-R5b-SM-9WG5S 20-29 years, female 52.2
GTEX-13FXS-0011-R5b-SM-5LZYE 50-59 years, male 52.0
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 52.0
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 33.7
Samples: 246

Max nTPM: 73.2
Min nTPM: 5.4
Std nTPM: 14.7
Median nTPM: 33.1
GTEX-17EVQ-0011-R6a-SM-7189U 70-79 years, male 73.2
GTEX-13IVO-0011-R6b-SM-5K7X9 70-79 years, male 72.4
GTEX-145LU-0011-R6a-SM-5S2V6 50-59 years, male 72.1
GTEX-1HUB1-0011-R6b-SM-ARU6W 60-69 years, male 72.0
GTEX-1F88E-0011-R6a-SM-CKZNW 60-69 years, female 71.0
GTEX-13FHP-0011-R6b-SM-5LZY6 50-59 years, male 65.7
GTEX-1HR9M-0011-R6a-SM-ARU6Z 60-69 years, male 62.9
GTEX-17MF6-0011-R6b-SM-7LG6G 40-49 years, male 62.6
GTEX-12WSE-0011-R6b-SM-5LZV5 20-29 years, male 61.5
GTEX-14ASI-0011-R6a-SM-5S2UZ 60-69 years, male 60.4
GTEX-1GMRU-0011-R6b-SM-A9G3B 50-59 years, male 59.8
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Brain - Putamen (basal ganglia)
Average nTPM: 29.1
Samples: 205

Max nTPM: 62.5
Min nTPM: 5.5
Std nTPM: 12.3
Median nTPM: 28.3
GTEX-1AX9I-0011-R7b-SM-7P8Q3 60-69 years, male 62.5
GTEX-12ZZW-0011-R7a-SM-5DUWC 50-59 years, male 59.7
GTEX-12WSA-0011-R7b-SM-5GU5U 60-69 years, male 59.0
GTEX-1HCVE-0011-R7b-SM-A9G1I 50-59 years, male 58.6
GTEX-11DYG-0011-R7b-SM-EXUS6 60-69 years, male 58.4
GTEX-WHSE-0011-R7A-SM-3P5YZ 20-29 years, male 58.0
GTEX-16Z82-0011-R7a-SM-7MKGJ 60-69 years, male 55.9
GTEX-13112-0011-R7b-SM-5DUVW 50-59 years, male 53.5
GTEX-139TT-0011-R7b-SM-5J2MN 60-69 years, male 53.3
GTEX-11PRG-0011-R7a-SM-DNZZT 50-59 years, male 50.9
GTEX-1J8Q2-0011-R7a-SM-CKZPF 60-69 years, male 50.8
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 71.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 59.3
FF:10164-103B2 76 years, female 59.3
Globus pallidus
Scaled Tags Per Million: 15.9
FF:10175-103C4 60 years, female 22.1
FF:10161-103A8 76 years, female 9.7
Nucleus accumbens
Scaled Tags Per Million: 71.9
FF:10037-101F1 23-56 years, mixed 71.9
Putamen
Scaled Tags Per Million: 70.2
FF:10176-103C5 60 years, female 70.2

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 19.3
Pig sample Sample description nTPM
Caudate
nTPM: 19.3
Samples: 4

Max nTPM: 24.5
Min nTPM: 13.9
Sample A Female 13.9
Sample B Female 24.5
Sample C Male 21.5
Sample D Male 17.2
Putamen
nTPM: 15.6
Samples: 4

Max nTPM: 20.7
Min nTPM: 8.0
Sample A Female 8.0
Sample B Female 18.5
Sample C Male 20.7
Sample D Male 15.3
Septum
nTPM: 11.9
Samples: 4

Max nTPM: 17.3
Min nTPM: 6.6
Sample A Female 15.1
Sample B Female 17.3
Sample C Male 6.6
Sample D Male 8.5
Ventral pallidum
nTPM: 13.1
Samples: 4

Max nTPM: 18.5
Min nTPM: 7.9
Sample A Female 13.7
Sample B Female 18.5
Sample C Male 7.9
Sample D Male 12.2

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 5.7
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 5.7
Samples: 4

Max nTPM: 12.6
Min nTPM: 1.5
Sample A Male 5.7
Sample B Male 12.6
Sample C Female 1.5
Sample D Female 3.1
Septum
nTPM: 5.6
Samples: 4

Max nTPM: 6.6
Min nTPM: 4.3
Sample A Male 6.6
Sample B Male 5.1
Sample C Female 6.4
Sample D Female 4.3
Ventral forebrain
nTPM: 5.6
Samples: 4

Max nTPM: 8.8
Min nTPM: 2.6
Sample A Male 8.1
Sample B Male 2.8
Sample C Female 8.8
Sample D Female 2.6

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The Human Protein Atlas

The Human Protein Atlas project is funded
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