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MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:18.0 nTPM
HPA:18.0 nTPM
GTEx:17.8 nTPM
FANTOM5:34.8 Scaled Tags Per Million
Pig:137.0 nTPM
Mouse:43.9 nTPM
Allen mouse:0.5 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 18.0
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 15.8
2019 Male, age 18, unknown 18.3
1827 Male, age 72, unknown 17.5
2586 Male, age 75, left hemisphere 16.9
2828 Female, age 72, unknown 16.8
2219 Male, age 76, both hemispheres 15.5
1870 Female, age 42, unknown 15.3
2411 Female, age 72, unknown 15.0
1830 Male, age 51, unknown 14.5
1833 Male, age 53, unknown 14.4
2666 Male, age 74, left hemisphere 14.3
Dorsal raphe nucleus
nTPM: 15.4
2298 Female, age 72, unknown 16.2
2047 Male, age 72, unknown 16.1
2750 Male, age 76, both hemispheres 15.5
1828 Male, age 53, unknown 15.3
2016 Female, age 72, unknown 13.9
Inferior colliculus
nTPM: 15.2
2849 Male, age 72, unknown 16.2
2097 Female, age 72, unknown 15.2
1848 Female, age 42, unknown 14.8
1890 Male, age 53, unknown 14.5
Median raphe nucleus
nTPM: 17.1
2220 Male, age 76, midline 17.1
Pedunculopontine tegmental nucleus
nTPM: 17.4
2334 Male, age 80, both hemispheres 19.4
1921 Female, age 85, both hemispheres 16.5
2338 Male, age 61, both hemispheres 16.4
Periaquaductal grey, anterior
nTPM: 15.7
1795 Male, age 51, unknown 17.0
1947 Male, age 18, unknown 15.9
2502 Female, age 75, unknown 14.3
Periaquaductal grey, dorsal
nTPM: 14.6
2850 Male, age 76, both hemispheres 15.8
1840 Male, age 53, unknown 14.9
1831 Male, age 72, unknown 14.5
2464 Female, age 72, unknown 13.2
Periaquaductal grey, lateral
nTPM: 15.3
2272 Male, age 74, both hemispheres 15.7
2140 Male, age 76, both hemispheres 15.1
2053 Male, age 18, unknown 15.0
Pretectal area
nTPM: 18.0
1944 Female, age 72, unknown 22.7
1817 Female, age 42, unknown 22.1
2007 Male, age 72, unknown 22.1
1816 Male, age 51, unknown 20.9
1815 Male, age 53, unknown 18.3
2667 Female, age 75, unknown 17.7
2224 Female, age 72, unknown 16.1
2273 Male, age 74, both hemispheres 15.3
2825 Male, age 18, unknown 14.8
2316 Male, age 76, right hemisphere 14.1
2407 Male, age 75, both hemispheres 13.8
Red nucleus
nTPM: 15.2
2785 Male, age 18, unknown 18.5
2584 Male, age 75, left hemisphere 16.8
2725 Female, age 75, unknown 16.0
1821 Female, age 72, unknown 15.4
2588 Male, age 74, left hemisphere 15.4
1954 Female, age 42, unknown 15.2
2823 Male, age 76, right hemisphere 14.9
1865 Male, age 51, unknown 14.4
2503 Female, age 72, unknown 14.1
2769 Male, age 72, unknown 14.0
2227 Male, age 72, unknown 13.8
1904 Male, age 53, unknown 13.7
Substantia nigra
nTPM: 15.9
1889 Female, age 72, unknown 20.0
1916 Female, age 42, unknown 18.4
2665 Male, age 74, both hemispheres 17.9
1941 Male, age 53, unknown 17.5
1851 Male, age 51, unknown 15.9
2590 Female, age 75, unknown 15.5
2583 Male, age 75, right hemisphere 14.7
2241 Male, age 72, unknown 13.7
2699 Male, age 18, unknown 13.1
2409 Female, age 72, unknown 11.9
Superior colliculus
nTPM: 16.1
2087 Female, age 72, unknown 18.9
1796 Male, age 53, unknown 18.2
2668 Female, age 75, unknown 16.4
2261 Male, age 18, unknown 16.2
1895 Male, age 76, right hemisphere 16.1
2587 Male, age 74, left hemisphere 15.9
1913 Female, age 42, unknown 15.1
1839 Male, age 51, unknown 15.0
1995 Male, age 72, unknown 14.4
2664 Male, age 75, both hemispheres 14.4
Ventral tegmental area
nTPM: 15.2
2410 Female, age 72, unknown 16.9
2218 Male, age 76, both hemispheres 16.8
1915 Female, age 42, unknown 15.5
2021 Male, age 53, unknown 14.3
1942 Male, age 51, unknown 14.2
2223 Female, age 72, unknown 13.7

MIDBRAIN - GTEx RNA-seqi
Average nTPM 17.8
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 17.8
Samples: 139

Max nTPM: 39.3
Min nTPM: 7.9
Std nTPM: 5.5
Median nTPM: 16.6
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 39.3
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 34.9
GTEX-13NYS-0011-R2b-SM-5MR4G 60-69 years, male 30.7
GTEX-1J1OQ-0011-R2b-SM-ARU88 40-49 years, female 29.5
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 28.9
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 27.6
GTEX-13OW8-0011-R2a-SM-5L3G2 60-69 years, male 27.4
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 27.4
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 27.3
GTEX-11DZ1-0011-R2a-SM-DNZZM 50-59 years, male 27.0
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 26.0
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 34.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 34.8
FF:10158-103A5 76 years, female 34.8

MIDBRAIN - Pig RNA-seqi
Average nTPM 137.0
Pig sample Sample description nTPM
Midbrain
nTPM: 128.0
Samples: 4

Max nTPM: 144.4
Min nTPM: 106.4
Sample A Female 135.3
Sample B Female 106.4
Sample C Male 144.4
Sample D Male 125.9
Periaqueductal gray
nTPM: 110.6
Samples: 3

Max nTPM: 132.6
Min nTPM: 97.5
Sample B Female 97.5
Sample C Male 132.6
Sample D Male 101.7
Substantia nigra
nTPM: 116.4
Samples: 4

Max nTPM: 151.2
Min nTPM: 87.1
Sample A Female 151.2
Sample B Female 87.1
Sample C Male 134.8
Sample D Male 92.6
Superior colliculi
nTPM: 137.0
Samples: 4

Max nTPM: 168.4
Min nTPM: 90.2
Sample A Female 168.4
Sample B Female 90.2
Sample C Male 150.9
Sample D Male 138.4

MIDBRAIN - Mouse RNA-seqi
Average nTPM 43.9
Mouse sample Sample description nTPM
Midbrain
nTPM: 44.0
Samples: 4

Max nTPM: 45.9
Min nTPM: 42.9
Sample A Male 43.8
Sample B Male 43.2
Sample C Female 42.9
Sample D Female 45.9

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.5
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.5
68269035 Antisense, RP_041208_01_E10, Mouse strain C57BL/6J (56 days, male) 0.5

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.