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HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: Medium
Neuronal cells: High
RNA expressioni
Consensus:129.8 nTPM
HPA:129.8 nTPM
GTEx:106.5 nTPM
FANTOM5:64.7 Scaled Tags Per Million
Pig:63.2 nTPM
Mouse:239.4 nTPM
Allen mouse:6.8 Expression energy

HIPPOCAMPUS - Antibody stainingi
Antibody HPA035933
Glial cells Medium
Neuronal cells High


HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 129.8
Sample id Sample description nTPM
Hippocampus
nTPM: 127.2
1898 Male, age 80, left hemisphere 136.6
2529 Female, age 94, left hemisphere 129.0
2148 Female, age 91, left hemisphere 126.3
2621 Female, age 67, right hemisphere 124.8
1911 Female, age 85, right hemisphere 123.9
1855 Male, age 76, left hemisphere 122.5
Dentate gyrus
nTPM: 126.0
2528 Male, age 74, both hemispheres 129.9
1927 Female, age 91, both hemispheres 129.7
2010 Male, age 76, both hemispheres 127.3
2530 Female, age 94, left hemisphere 126.9
2246 Female, age 85, both hemispheres 123.0
2531 Female, age 67, both hemispheres 119.0
Entorhinal gyrus
nTPM: 125.7
2764 Male, age 80, right hemisphere 130.4
2117 Female, age 91, right hemisphere 129.6
1938 Female, age 85, left hemisphere 127.2
1787 Male, age 76, left hemisphere 126.1
2613 Female, age 94, left hemisphere 120.8
2686 Male, age 75, right hemisphere 120.0
Hippocampus, CA1
nTPM: 129.5
2749 Male, age 80, left hemisphere 140.7
1873 Female, age 85, both hemispheres 128.8
2527 Male, age 74, both hemispheres 128.8
2082 Female, age 91, right hemisphere 127.3
2045 Male, age 76, both hemispheres 122.0
Hippocampus, CA2
nTPM: 129.8
1963 Male, age 80, left hemisphere 140.4
2249 Male, age 74, both hemispheres 132.0
1892 Male, age 76, both hemispheres 131.7
2437 Female, age 94, left hemisphere 126.0
1940 Female, age 85, left hemisphere 124.6
2113 Female, age 91, right hemisphere 124.4
Hippocampus, CA3
nTPM: 127.3
2436 Male, age 74, both hemispheres 132.7
2137 Male, age 80, left hemisphere 131.2
1867 Male, age 76, both hemispheres 128.3
1891 Female, age 85, both hemispheres 125.8
2620 Female, age 94, left hemisphere 124.8
2861 Female, age 67, both hemispheres 120.8
Parahippocampal cortex
nTPM: 125.3
1933 Female, age 85, both hemispheres 130.0
1990 Female, age 91, right hemisphere 129.6
1850 Male, age 80, both hemispheres 127.9
2250 Female, age 67, right hemisphere 127.7
2245 Female, age 91, both hemispheres 125.5
2532 Female, age 72, left hemisphere 124.6
2018 Male, age 76, both hemispheres 124.5
2693 Female, age 94, both hemispheres 123.1
2692 Male, age 74, both hemispheres 121.0
2622 Female, age 67, right hemisphere 119.7
Perirhinal gyrus
nTPM: 129.1
1847 Female, age 91, left hemisphere 134.6
1794 Male, age 80, right hemisphere 132.5
1841 Female, age 85, right hemisphere 130.1
2521 Female, age 94, right hemisphere 125.3
2848 Male, age 76, right hemisphere 123.2
Subiculum
nTPM: 125.6
1977 Female, age 85, both hemispheres 131.0
1901 Male, age 80, both hemispheres 128.1
2619 Male, age 74, both hemispheres 126.5
2729 Female, age 91, right hemisphere 124.3
2438 Female, age 94, left hemisphere 123.6
2042 Male, age 76, both hemispheres 119.9

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 106.5
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 106.5
Samples: 197

Max nTPM: 324.4
Min nTPM: 44.0
Std nTPM: 34.6
Median nTPM: 100.0
GTEX-14LLW-0011-R1a-SM-5ZZVD 70-79 years, female 324.4
GTEX-144GL-0011-R1a-SM-5PNZ5 50-59 years, male 241.7
GTEX-13O3Q-0011-R1b-SM-5KM3L 50-59 years, male 223.2
GTEX-13NYB-0011-R1b-SM-5KM4F 40-49 years, male 215.7
GTEX-1399T-0011-R1b-SM-5DUWN 60-69 years, male 188.4
GTEX-1HT8W-0011-R1b-SM-CJI3V 30-39 years, male 179.5
GTEX-NL3H-0011-R1a-SM-48TDJ 60-69 years, male 175.3
GTEX-13FXS-0011-R1a-SM-5K7U6 50-59 years, male 174.8
GTEX-1GMR8-0011-R1b-SM-CJI2O 50-59 years, female 173.3
GTEX-1F75A-0011-R1b-SM-CE6RA 50-59 years, male 171.3
GTEX-1IOXB-0011-R1a-SM-D4P27 50-59 years, male 168.9
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 64.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 64.7
FF:10169-103B7 60 years, female 68.0
FF:10153-102I9 76 years, female 61.5

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 63.2
Pig sample Sample description nTPM
Dorsal hippocampus
nTPM: 63.2
Samples: 4

Max nTPM: 91.9
Min nTPM: 49.5
Sample A Female 91.9
Sample B Female 57.9
Sample C Male 53.5
Sample D Male 49.5
Entorhinal cortex
nTPM: 54.7
Samples: 4

Max nTPM: 68.3
Min nTPM: 42.7
Sample A Female 61.0
Sample B Female 68.3
Sample C Male 42.7
Sample D Male 46.9
Subiculum
nTPM: 45.0
Samples: 4

Max nTPM: 70.3
Min nTPM: 33.6
Sample A Female 70.3
Sample B Female 38.3
Sample C Male 33.6
Sample D Male 37.8
Ventral hippocampus
nTPM: 49.8
Samples: 4

Max nTPM: 60.3
Min nTPM: 32.5
Sample A Female 59.4
Sample B Female 32.5
Sample C Male 47.1
Sample D Male 60.3

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 239.4
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 239.4
Samples: 4

Max nTPM: 253.3
Min nTPM: 224.4
Sample A Male 242.7
Sample B Male 253.3
Sample C Female 237.1
Sample D Female 224.4
Hippocampal formation
nTPM: 233.0
Samples: 4

Max nTPM: 255.2
Min nTPM: 215.8
Sample A Male 236.8
Sample B Male 215.8
Sample C Female 224.3
Sample D Female 255.2

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 6.8
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 6.8
512999 Antisense, RP_040809_02_G08, Mouse strain C57BL/6J (56 days, male) 9.1
81599652 Antisense, RP_071213_01_A11, Mouse strain C57BL/6J (56 days, male) 4.6

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.