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TIMM10B
BASAL GANGLIA - Expression summary
Protein expression
Caudatei
h
m
l
n
Glial cells: Not detected
Neuronal cells: Medium
RNA expressioni
Consensus:13.3 nTPM
HPA:13.3 nTPM
GTEx:14.7 nTPM
FANTOM5:80.1 Scaled Tags Per Million

CAUDATE - Antibody stainingi
Antibody HPA052265
Glial cells Not detected
Neuronal cells Medium



BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 13.3
Sample id Sample description nTPM
Caudate nucleus
nTPM: 10.1
2288 Male, age 75, left hemisphere 13.2
2481 Female, age 94, left hemisphere 10.5
1781 Male, age 74, unknown 10.3
2289 Male, age 61, right hemisphere 9.8
2290 Female, age 72, unknown 9.4
1854 Male, age 80, left hemisphere 9.3
2846 Female, age 79, unknown 9.3
1857 Female, age 85, left hemisphere 8.8
Claustrum
nTPM: 12.6
2292 Female, age 85, both hemispheres 13.6
2568 Male, age 61, both hemispheres 13.5
1956 Male, age 74, unknown 13.2
2284 Female, age 91, both hemispheres 13.1
2491 Male, age 75, both hemispheres 12.9
2198 Male, age 80, both hemispheres 12.4
2645 Female, age 72, unknown 12.0
2392 Female, age 94, both hemispheres 11.7
2196 Female, age 79, unknown 11.4
Globus pallidus, externus
nTPM: 11.4
1996 Male, age 80, right hemisphere 12.4
2772 Female, age 79, unknown 12.3
2567 Female, age 72, unknown 11.8
2395 Male, age 75, both hemispheres 10.6
2646 Male, age 61, right hemisphere 9.8
Globus pallidus, internus
nTPM: 13.3
2778 Female, age 91, both hemispheres 15.6
2111 Female, age 85, right hemisphere 15.5
2287 Male, age 75, right hemisphere 14.2
1818 Male, age 74, unknown 13.5
2566 Female, age 72, unknown 11.8
2037 Male, age 80, right hemisphere 11.7
2483 Female, age 94, right hemisphere 10.8
Nucleus accumbens
nTPM: 10.3
2286 Male, age 75, left hemisphere 12.2
2698 Female, age 72, unknown 11.4
2824 Male, age 61, right hemisphere 11.2
2391 Female, age 94, left hemisphere 11.0
2732 Male, age 80, right hemisphere 10.9
1856 Female, age 91, right hemisphere 8.8
1783 Male, age 74, unknown 8.6
1806 Female, age 85, left hemisphere 8.6
Nucleus basalis of Meynert
nTPM: 10.6
2821 Male, age 75, both hemispheres 11.9
2484 Female, age 94, left hemisphere 10.5
2393 Male, age 80, right hemisphere 10.2
2569 Male, age 61, both hemispheres 9.8
Nucleus of the diagonal band
nTPM: 11.5
2195 Female, age 85, both hemispheres 12.7
2775 Male, age 80, right hemisphere 12.2
2029 Male, age 61, right hemisphere 11.6
1812 Female, age 91, both hemispheres 10.7
1979 Male, age 74, unknown 10.5
Olfactory tubercle
nTPM: 11.4
2856 Male, age 75, right hemisphere 12.5
1998 Female, age 91, both hemispheres 12.0
2487 Female, age 94, left hemisphere 11.6
1846 Male, age 80, right hemisphere 9.6
Putamen
nTPM: 10.3
1829 Male, age 74, unknown 10.6
1838 Male, age 80, right hemisphere 10.6
2482 Female, age 94, left hemisphere 10.3
2489 Female, age 72, unknown 10.2
2647 Male, age 75, left hemisphere 10.1
1937 Female, age 91, right hemisphere 10.0
2466 Female, age 79, unknown 10.0
Septal nuclei
nTPM: 11.5
2629 Female, age 94, right hemisphere 13.8
2394 Male, age 61, left hemisphere 12.4
2009 Female, age 91, both hemispheres 11.8
1960 Male, age 74, unknown 11.1
2059 Female, age 85, both hemispheres 11.1
2031 Female, age 72, unknown 10.6
2199 Male, age 80, right hemisphere 9.8

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 14.7
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 13.5
Samples: 246

Max nTPM: 26.0
Min nTPM: 7.2
Std nTPM: 2.5
Median nTPM: 13.2
GTEX-1HCU6-0011-R5a-SM-ARU76 60-69 years, female 26.0
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 24.0
GTEX-1H1CY-0011-R5a-SM-CM2SN 60-69 years, female 21.7
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 21.0
GTEX-1B996-0011-R5a-SM-7P8PN 60-69 years, male 20.8
GTEX-RNOR-0011-R5A-SM-2TF4J 50-59 years, female 20.1
GTEX-1C6VR-0011-R5a-SM-9QEH1 60-69 years, male 19.7
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 19.5
GTEX-13CF2-0011-R5a-SM-5LZWS 60-69 years, male 19.2
GTEX-11UD1-0011-R5b-SM-5P9FP 40-49 years, female 18.7
GTEX-1HBPH-0011-R5b-SM-A9G1R 40-49 years, female 18.6
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 12.7
Samples: 246

Max nTPM: 25.6
Min nTPM: 5.4
Std nTPM: 2.9
Median nTPM: 12.4
GTEX-1HFI6-0011-R6b-SM-CM2SR 40-49 years, male 25.6
GTEX-11DYG-0011-R6a-SM-DO936 60-69 years, male 23.8
GTEX-12WSD-0011-R6b-SM-5P9JU 60-69 years, female 22.6
GTEX-16Z82-0011-R6a-SM-7IGLV 60-69 years, male 21.0
GTEX-1C6WA-0011-R6a-SM-7PBYP 60-69 years, male 20.8
GTEX-13N1W-0011-R6a-SM-5MR43 70-79 years, male 19.8
GTEX-11DXW-0011-R6a-SM-DO11N 40-49 years, male 19.8
GTEX-1LC47-0011-R6b-SM-EZ6MI 60-69 years, male 19.6
GTEX-1B996-0011-R6b-SM-793AQ 60-69 years, male 19.5
GTEX-ZUA1-0011-R6b-SM-4YCDD 40-49 years, male 19.4
GTEX-ZAB4-0011-R6a-SM-4SOKD 40-49 years, male 19.2
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Brain - Putamen (basal ganglia)
Average nTPM: 14.7
Samples: 205

Max nTPM: 29.4
Min nTPM: 7.7
Std nTPM: 3.1
Median nTPM: 14.4
GTEX-13N2G-0011-R7a-SM-5MR42 60-69 years, male 29.4
GTEX-13CF2-0011-R7b-SM-5K7UV 60-69 years, male 26.6
GTEX-12WSE-0011-R7a-SM-5PNWF 20-29 years, male 24.5
GTEX-1HCU6-0011-R7b-SM-ARL77 60-69 years, female 22.5
GTEX-139TS-0011-R7a-SM-5K7X7 60-69 years, male 22.2
GTEX-ZE7O-0011-R7a-SM-57WCU 50-59 years, female 21.3
GTEX-ZVZQ-0011-R7b-SM-57WBB 60-69 years, female 20.9
GTEX-1LVA9-0011-R7a-SM-EYYWG 50-59 years, male 20.5
GTEX-1B996-0011-R7b-SM-7IGNT 60-69 years, male 20.3
GTEX-ZXG5-0011-R7b-SM-57WCC 60-69 years, male 20.0
GTEX-1F6I4-0011-R7a-SM-CJI24 60-69 years, male 19.9
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 80.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 59.9
FF:10164-103B2 76 years, female 59.9
Globus pallidus
Scaled Tags Per Million: 62.8
FF:10161-103A8 76 years, female 71.1
FF:10175-103C4 60 years, female 54.4
Nucleus accumbens
Scaled Tags Per Million: 80.1
FF:10037-101F1 23-56 years, mixed 80.1
Putamen
Scaled Tags Per Million: 69.2
FF:10176-103C5 60 years, female 69.2

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.