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RAMP1
BASAL GANGLIA - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:171.2 nTPM
HPA:171.2 nTPM
GTEx:211.3 nTPM
FANTOM5:73.0 Scaled Tags Per Million
Pig:196.1 nTPM
Mouse:63.1 nTPM
Allen mouse:0.1 Expression energy

BASAL GANGLIA - Annotated protein expression
Pending normal tissue analysis

BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 171.2
Sample id Sample description nTPM
Caudate nucleus
nTPM: 161.2
1857 Female, age 85, left hemisphere 180.6
1854 Male, age 80, left hemisphere 170.7
2290 Female, age 72, unknown 170.7
2481 Female, age 94, left hemisphere 160.5
1781 Male, age 74, unknown 156.4
2289 Male, age 61, right hemisphere 155.1
2846 Female, age 79, unknown 148.3
2288 Male, age 75, left hemisphere 147.2
Claustrum
nTPM: 136.2
2196 Female, age 79, unknown 144.6
2491 Male, age 75, both hemispheres 144.1
2284 Female, age 91, both hemispheres 137.8
2198 Male, age 80, both hemispheres 136.3
2392 Female, age 94, both hemispheres 134.0
2645 Female, age 72, unknown 133.4
2292 Female, age 85, both hemispheres 133.2
1956 Male, age 74, unknown 131.6
2568 Male, age 61, both hemispheres 130.5
Globus pallidus, externus
nTPM: 171.2
1996 Male, age 80, right hemisphere 194.1
2646 Male, age 61, right hemisphere 179.1
2772 Female, age 79, unknown 169.8
2567 Female, age 72, unknown 157.3
2395 Male, age 75, both hemispheres 155.7
Globus pallidus, internus
nTPM: 166.5
2037 Male, age 80, right hemisphere 182.8
2483 Female, age 94, right hemisphere 177.0
2287 Male, age 75, right hemisphere 167.5
1818 Male, age 74, unknown 165.9
2778 Female, age 91, both hemispheres 161.9
2566 Female, age 72, unknown 156.8
2111 Female, age 85, right hemisphere 153.5
Nucleus accumbens
nTPM: 165.7
1806 Female, age 85, left hemisphere 185.3
1856 Female, age 91, right hemisphere 173.3
2732 Male, age 80, right hemisphere 170.0
2698 Female, age 72, unknown 167.9
1783 Male, age 74, unknown 166.0
2286 Male, age 75, left hemisphere 158.9
2824 Male, age 61, right hemisphere 155.1
2391 Female, age 94, left hemisphere 149.4
Nucleus basalis of Meynert
nTPM: 164.6
2569 Male, age 61, both hemispheres 189.4
2393 Male, age 80, right hemisphere 166.4
2484 Female, age 94, left hemisphere 158.6
2821 Male, age 75, both hemispheres 144.0
Nucleus of the diagonal band
nTPM: 160.7
1979 Male, age 74, unknown 180.8
2195 Female, age 85, both hemispheres 160.2
1812 Female, age 91, both hemispheres 158.7
2775 Male, age 80, right hemisphere 158.5
2029 Male, age 61, right hemisphere 145.1
Olfactory tubercle
nTPM: 151.9
1846 Male, age 80, right hemisphere 159.7
2856 Male, age 75, right hemisphere 159.4
2487 Female, age 94, left hemisphere 145.6
1998 Female, age 91, both hemispheres 143.0
Putamen
nTPM: 159.1
1838 Male, age 80, right hemisphere 168.3
2647 Male, age 75, left hemisphere 162.1
2489 Female, age 72, unknown 162.0
1937 Female, age 91, right hemisphere 158.8
2482 Female, age 94, left hemisphere 157.5
2466 Female, age 79, unknown 154.9
1829 Male, age 74, unknown 150.0
Septal nuclei
nTPM: 159.9
2199 Male, age 80, right hemisphere 182.8
2059 Female, age 85, both hemispheres 177.3
2009 Female, age 91, both hemispheres 157.6
1960 Male, age 74, unknown 156.8
2394 Male, age 61, left hemisphere 150.2
2031 Female, age 72, unknown 149.7
2629 Female, age 94, right hemisphere 144.7

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 211.3
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 154.3
Samples: 246

Max nTPM: 379.6
Min nTPM: 49.7
Std nTPM: 49.1
Median nTPM: 144.3
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 379.6
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 311.2
GTEX-1J8JJ-0011-R5a-SM-D4P2G 60-69 years, female 298.2
GTEX-14753-0011-R5a-SM-5S2VW 60-69 years, male 296.7
GTEX-1EH9U-0011-R5a-SM-CJI2K 60-69 years, male 282.5
GTEX-1A8G6-0011-R5b-SM-7IGQG 60-69 years, male 269.6
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 268.2
GTEX-1GPI6-0011-R5a-SM-CJI2W 60-69 years, male 267.6
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 265.8
GTEX-1IL2U-0011-R5a-SM-CE6SN 60-69 years, male 265.0
GTEX-16NPV-0011-R5a-SM-7EPGK 50-59 years, female 252.2
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 211.3
Samples: 246

Max nTPM: 900.5
Min nTPM: 61.9
Std nTPM: 90.8
Median nTPM: 195.4
GTEX-14753-0011-R6b-SM-5S2UD 60-69 years, male 900.5
GTEX-1RLM8-0011-R6a-SM-EYYXS 50-59 years, male 730.0
GTEX-12584-0011-R6a-SM-5NQ7C 40-49 years, male 519.3
GTEX-13IVO-0011-R6b-SM-5K7X9 70-79 years, male 442.6
GTEX-ZV68-0011-R6a-SM-51MSR 50-59 years, female 412.3
GTEX-147F4-0011-R6b-SM-5S2UP 50-59 years, male 411.7
GTEX-144GO-0011-R6b-SM-5S2V7 60-69 years, male 411.3
GTEX-1IGQW-0011-R6a-SM-CM2TC 60-69 years, male 405.2
GTEX-1H3VE-0011-R6b-SM-A9G1M 40-49 years, male 401.6
GTEX-X261-0011-R6B-SM-4E3J8 50-59 years, male 400.7
GTEX-1LB8K-0011-R6a-SM-EXURT 50-59 years, male 395.2
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Brain - Putamen (basal ganglia)
Average nTPM: 172.5
Samples: 205

Max nTPM: 408.9
Min nTPM: 83.2
Std nTPM: 57.8
Median nTPM: 159.9
GTEX-12WSA-0011-R7b-SM-5GU5U 60-69 years, male 408.9
GTEX-132Q8-0011-R7b-SM-5N9F1 60-69 years, male 405.6
GTEX-ZV68-0011-R7a-SM-51MT4 50-59 years, female 360.0
GTEX-1I1GS-0011-R7a-SM-CM2T6 60-69 years, male 357.8
GTEX-1IKOH-0011-R7b-SM-CKZPH 60-69 years, female 333.2
GTEX-1R46S-0011-R7b-SM-EXUTH 60-69 years, female 313.2
GTEX-1LVA9-0011-R7a-SM-EYYWG 50-59 years, male 310.8
GTEX-17MF6-0011-R7b-SM-7LG6J 40-49 years, male 303.0
GTEX-13CF2-0011-R7b-SM-5K7UV 60-69 years, male 299.6
GTEX-1J8Q2-0011-R7a-SM-CKZPF 60-69 years, male 295.1
GTEX-12ZZW-0011-R7a-SM-5DUWC 50-59 years, male 294.1
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 73.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 73.0
FF:10164-103B2 76 years, female 73.0
Globus pallidus
Scaled Tags Per Million: 51.1
FF:10161-103A8 76 years, female 56.5
FF:10175-103C4 60 years, female 45.7
Nucleus accumbens
Scaled Tags Per Million: 30.7
FF:10037-101F1 23-56 years, mixed 30.7
Putamen
Scaled Tags Per Million: 52.3
FF:10176-103C5 60 years, female 52.3

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 196.1
Pig sample Sample description nTPM
Caudate
nTPM: 196.1
Samples: 4

Max nTPM: 235.5
Min nTPM: 141.6
Sample A Female 188.3
Sample B Female 219.0
Sample C Male 235.5
Sample D Male 141.6
Putamen
nTPM: 159.6
Samples: 4

Max nTPM: 179.1
Min nTPM: 135.7
Sample A Female 147.1
Sample B Female 135.7
Sample C Male 179.1
Sample D Male 176.4
Septum
nTPM: 117.8
Samples: 4

Max nTPM: 178.1
Min nTPM: 60.9
Sample A Female 178.1
Sample B Female 143.7
Sample C Male 88.4
Sample D Male 60.9
Ventral pallidum
nTPM: 145.5
Samples: 4

Max nTPM: 184.4
Min nTPM: 100.0
Sample A Female 144.3
Sample B Female 184.4
Sample C Male 100.0
Sample D Male 153.1

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 63.1
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 60.6
Samples: 4

Max nTPM: 71.6
Min nTPM: 52.5
Sample A Male 62.6
Sample B Male 71.6
Sample C Female 52.5
Sample D Female 55.5
Septum
nTPM: 44.0
Samples: 4

Max nTPM: 46.7
Min nTPM: 38.4
Sample A Male 46.7
Sample B Male 45.0
Sample C Female 45.8
Sample D Female 38.4
Ventral forebrain
nTPM: 63.1
Samples: 4

Max nTPM: 74.7
Min nTPM: 57.9
Sample A Male 59.5
Sample B Male 60.4
Sample C Female 74.7
Sample D Female 57.9

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 0.1
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 0.1
68498944 Antisense, RP_050113_02_F08, Mouse strain C57BL/6J (56 days, male) 0.1
1913 Antisense, RP_040428_01_C05, Mouse strain C57BL/6J (56 days, male) 0.1
1912 Antisense, RP_040428_01_C05, Mouse strain C57BL/6J (56 days, male) 0.1
Pallidum
Expression energy: 0.0
68498944 Antisense, RP_050113_02_F08, Mouse strain C57BL/6J (56 days, male) 0.0
1913 Antisense, RP_040428_01_C05, Mouse strain C57BL/6J (56 days, male) 0.0
1912 Antisense, RP_040428_01_C05, Mouse strain C57BL/6J (56 days, male) 0.0

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.