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VSTM2L
MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:36.5 nTPM
HPA:36.5 nTPM
GTEx:22.2 nTPM
FANTOM5:3.3 Scaled Tags Per Million
Pig:55.3 nTPM
Mouse:26.0 nTPM

MIDBRAIN - Annotated protein expression
Pending normal tissue analysis

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 36.5
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 8.1
2019 Male, age 18, unknown 20.8
2411 Female, age 72, unknown 14.2
1833 Male, age 53, unknown 13.1
2219 Male, age 76, both hemispheres 10.9
1827 Male, age 72, unknown 9.0
2586 Male, age 75, left hemisphere 5.3
1830 Male, age 51, unknown 4.8
2828 Female, age 72, unknown 2.5
1870 Female, age 42, unknown 0.7
2666 Male, age 74, left hemisphere 0.0
Dorsal raphe nucleus
nTPM: 4.6
2298 Female, age 72, unknown 10.2
2047 Male, age 72, unknown 6.2
1828 Male, age 53, unknown 4.0
2750 Male, age 76, both hemispheres 2.4
2016 Female, age 72, unknown 0.0
Inferior colliculus
nTPM: 36.5
2849 Male, age 72, unknown 46.1
1848 Female, age 42, unknown 35.7
1890 Male, age 53, unknown 34.3
2097 Female, age 72, unknown 29.7
Median raphe nucleus
nTPM: 8.2
2220 Male, age 76, midline 8.2
Pedunculopontine tegmental nucleus
nTPM: 5.8
1921 Female, age 85, both hemispheres 16.2
2334 Male, age 80, both hemispheres 1.3
2338 Male, age 61, both hemispheres 0.0
Periaquaductal grey, anterior
nTPM: 19.0
2502 Female, age 75, unknown 57.1
1795 Male, age 51, unknown 0.0
1947 Male, age 18, unknown 0.0
Periaquaductal grey, dorsal
nTPM: 19.9
1840 Male, age 53, unknown 47.3
2464 Female, age 72, unknown 15.5
2850 Male, age 76, both hemispheres 9.6
1831 Male, age 72, unknown 7.0
Periaquaductal grey, lateral
nTPM: 4.5
2140 Male, age 76, both hemispheres 13.7
2053 Male, age 18, unknown 0.0
2272 Male, age 74, both hemispheres 0.0
Pretectal area
nTPM: 4.0
2407 Male, age 75, both hemispheres 9.0
1944 Female, age 72, unknown 8.7
2316 Male, age 76, right hemisphere 5.8
1817 Female, age 42, unknown 5.5
2224 Female, age 72, unknown 5.1
1816 Male, age 51, unknown 3.4
2007 Male, age 72, unknown 2.9
2667 Female, age 75, unknown 2.2
2825 Male, age 18, unknown 1.9
1815 Male, age 53, unknown 0.0
2273 Male, age 74, both hemispheres 0.0
Red nucleus
nTPM: 8.0
2785 Male, age 18, unknown 17.3
2503 Female, age 72, unknown 12.9
2769 Male, age 72, unknown 10.6
2588 Male, age 74, left hemisphere 8.7
2227 Male, age 72, unknown 8.6
2584 Male, age 75, left hemisphere 8.6
1821 Female, age 72, unknown 8.5
1904 Male, age 53, unknown 7.5
2823 Male, age 76, right hemisphere 5.6
1954 Female, age 42, unknown 4.2
1865 Male, age 51, unknown 3.8
2725 Female, age 75, unknown 0.0
Substantia nigra
nTPM: 7.9
1916 Female, age 42, unknown 25.5
2241 Male, age 72, unknown 18.2
2665 Male, age 74, both hemispheres 14.1
1851 Male, age 51, unknown 8.6
2699 Male, age 18, unknown 7.1
1889 Female, age 72, unknown 5.9
1941 Male, age 53, unknown 0.0
2409 Female, age 72, unknown 0.0
2583 Male, age 75, right hemisphere 0.0
2590 Female, age 75, unknown 0.0
Superior colliculus
nTPM: 10.4
2664 Male, age 75, both hemispheres 31.6
1839 Male, age 51, unknown 23.9
1895 Male, age 76, right hemisphere 17.8
1796 Male, age 53, unknown 17.7
2587 Male, age 74, left hemisphere 11.3
2261 Male, age 18, unknown 2.2
1913 Female, age 42, unknown 0.0
1995 Male, age 72, unknown 0.0
2087 Female, age 72, unknown 0.0
2668 Female, age 75, unknown 0.0
Ventral tegmental area
nTPM: 7.8
2410 Female, age 72, unknown 15.2
2021 Male, age 53, unknown 11.3
1942 Male, age 51, unknown 11.1
1915 Female, age 42, unknown 5.4
2223 Female, age 72, unknown 4.1
2218 Male, age 76, both hemispheres 0.0

MIDBRAIN - GTEx RNA-seqi
Average nTPM 22.2
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 22.2
Samples: 139

Max nTPM: 69.2
Min nTPM: 1.2
Std nTPM: 16.2
Median nTPM: 18.8
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 69.2
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 63.1
GTEX-11GSP-0011-R2b-SM-9QEGE 60-69 years, female 59.6
GTEX-13OW8-0011-R2a-SM-5L3G2 60-69 years, male 58.1
GTEX-1MA7X-0011-R2b-SM-EZ6MT 60-69 years, male 56.7
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 56.0
GTEX-1399T-0011-R2b-SM-5DUXM 60-69 years, male 54.7
GTEX-1HT8W-0011-R2a-SM-CMKH9 30-39 years, male 53.3
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 51.4
GTEX-1GN73-0011-R2a-SM-CJI2V 60-69 years, male 51.0
GTEX-15CHQ-0011-R2b-SM-6AJAD 60-69 years, male 50.1
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 3.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 3.3
FF:10158-103A5 76 years, female 3.3

MIDBRAIN - Pig RNA-seqi
Average nTPM 55.3
Pig sample Sample description nTPM
Midbrain
nTPM: 55.3
Samples: 4

Max nTPM: 179.8
Min nTPM: 7.9
Sample A Female 10.1
Sample B Female 23.3
Sample C Male 7.9
Sample D Male 179.8
Periaqueductal gray
nTPM: 42.4
Samples: 3

Max nTPM: 65.4
Min nTPM: 24.3
Sample B Female 24.3
Sample C Male 65.4
Sample D Male 37.6
Substantia nigra
nTPM: 29.8
Samples: 4

Max nTPM: 54.8
Min nTPM: 6.3
Sample A Female 37.9
Sample B Female 20.3
Sample C Male 54.8
Sample D Male 6.3
Superior colliculi
nTPM: 46.2
Samples: 4

Max nTPM: 100.0
Min nTPM: 5.6
Sample A Female 100.0
Sample B Female 5.6
Sample C Male 8.0
Sample D Male 71.0

MIDBRAIN - Mouse RNA-seqi
Average nTPM 26.0
Mouse sample Sample description nTPM
Midbrain
nTPM: 26.0
Samples: 4

Max nTPM: 33.5
Min nTPM: 22.2
Sample A Male 33.5
Sample B Male 23.1
Sample C Female 22.2
Sample D Female 25.1

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.