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MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:15.6 nTPM
HPA:15.6 nTPM
GTEx:28.4 nTPM
FANTOM5:111.9 Scaled Tags Per Million
Pig:49.0 nTPM
Mouse:5.7 nTPM
Allen mouse:0.2 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 15.6
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 10.0
1830 Male, age 51, unknown 11.4
2828 Female, age 72, unknown 11.3
2666 Male, age 74, left hemisphere 11.2
2019 Male, age 18, unknown 10.6
1827 Male, age 72, unknown 10.3
1833 Male, age 53, unknown 10.1
1870 Female, age 42, unknown 10.1
2411 Female, age 72, unknown 9.6
2219 Male, age 76, both hemispheres 8.3
2586 Male, age 75, left hemisphere 7.5
Dorsal raphe nucleus
nTPM: 12.0
2298 Female, age 72, unknown 14.5
2016 Female, age 72, unknown 12.8
2750 Male, age 76, both hemispheres 11.4
1828 Male, age 53, unknown 10.9
2047 Male, age 72, unknown 10.5
Inferior colliculus
nTPM: 10.5
1890 Male, age 53, unknown 11.3
2097 Female, age 72, unknown 11.1
2849 Male, age 72, unknown 10.0
1848 Female, age 42, unknown 9.6
Median raphe nucleus
nTPM: 11.9
2220 Male, age 76, midline 11.9
Pedunculopontine tegmental nucleus
nTPM: 15.6
2338 Male, age 61, both hemispheres 24.1
2334 Male, age 80, both hemispheres 13.5
1921 Female, age 85, both hemispheres 9.3
Periaquaductal grey, anterior
nTPM: 9.3
1795 Male, age 51, unknown 10.2
1947 Male, age 18, unknown 9.3
2502 Female, age 75, unknown 8.4
Periaquaductal grey, dorsal
nTPM: 12.2
2850 Male, age 76, both hemispheres 13.9
1831 Male, age 72, unknown 13.1
1840 Male, age 53, unknown 11.5
2464 Female, age 72, unknown 10.4
Periaquaductal grey, lateral
nTPM: 13.1
2140 Male, age 76, both hemispheres 13.6
2272 Male, age 74, both hemispheres 13.6
2053 Male, age 18, unknown 12.1
Pretectal area
nTPM: 11.2
2273 Male, age 74, both hemispheres 13.9
2316 Male, age 76, right hemisphere 13.8
2224 Female, age 72, unknown 12.6
2407 Male, age 75, both hemispheres 12.0
1817 Female, age 42, unknown 11.5
1815 Male, age 53, unknown 11.1
1944 Female, age 72, unknown 10.8
2007 Male, age 72, unknown 10.7
2825 Male, age 18, unknown 9.9
2667 Female, age 75, unknown 8.8
1816 Male, age 51, unknown 8.5
Red nucleus
nTPM: 11.3
2725 Female, age 75, unknown 14.0
2503 Female, age 72, unknown 13.8
1865 Male, age 51, unknown 13.2
2823 Male, age 76, right hemisphere 12.0
1904 Male, age 53, unknown 11.9
2769 Male, age 72, unknown 11.3
2785 Male, age 18, unknown 11.1
2227 Male, age 72, unknown 10.8
1821 Female, age 72, unknown 10.3
1954 Female, age 42, unknown 10.0
2584 Male, age 75, left hemisphere 9.2
2588 Male, age 74, left hemisphere 7.9
Substantia nigra
nTPM: 12.9
2590 Female, age 75, unknown 17.4
2699 Male, age 18, unknown 15.9
2665 Male, age 74, both hemispheres 14.4
2409 Female, age 72, unknown 13.5
1916 Female, age 42, unknown 12.5
2241 Male, age 72, unknown 12.1
1851 Male, age 51, unknown 11.5
1941 Male, age 53, unknown 10.8
2583 Male, age 75, right hemisphere 10.7
1889 Female, age 72, unknown 10.2
Superior colliculus
nTPM: 11.0
1913 Female, age 42, unknown 15.2
2587 Male, age 74, left hemisphere 13.8
1995 Male, age 72, unknown 12.1
1839 Male, age 51, unknown 10.4
1796 Male, age 53, unknown 10.3
2087 Female, age 72, unknown 10.1
2261 Male, age 18, unknown 9.6
2668 Female, age 75, unknown 9.6
2664 Male, age 75, both hemispheres 9.5
1895 Male, age 76, right hemisphere 9.3
Ventral tegmental area
nTPM: 12.2
2021 Male, age 53, unknown 14.1
2218 Male, age 76, both hemispheres 13.0
1915 Female, age 42, unknown 12.0
1942 Male, age 51, unknown 11.9
2410 Female, age 72, unknown 11.6
2223 Female, age 72, unknown 10.6

MIDBRAIN - GTEx RNA-seqi
Average nTPM 28.4
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 28.4
Samples: 139

Max nTPM: 168.5
Min nTPM: 2.5
Std nTPM: 28.2
Median nTPM: 20.0
GTEX-14PN4-0011-R2a-SM-6EU2Y 50-59 years, male 168.5
GTEX-1JMQK-0011-R2a-SM-EYYXQ 60-69 years, male 152.2
GTEX-132Q8-0011-R2b-SM-5EQ5Z 60-69 years, male 112.5
GTEX-1F48J-0011-R2a-SM-CL535 50-59 years, female 111.0
GTEX-X585-0011-R2B-SM-46MVF 50-59 years, male 95.0
GTEX-R55E-0011-R2A-SM-EYYV9 20-29 years, male 93.9
GTEX-NL4W-0011-R2a-SM-2I5GV 50-59 years, male 90.4
GTEX-NPJ8-0011-R2a-SM-2TC6M 40-49 years, male 87.5
GTEX-T5JC-0011-R2A-SM-32PLZ 20-29 years, male 86.3
GTEX-1H1DG-0011-R2a-SM-ADEIQ 70-79 years, male 84.5
GTEX-PWO3-0011-R2A-SM-2S1OX 60-69 years, female 82.3
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 111.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 111.9
FF:10158-103A5 76 years, female 111.9

MIDBRAIN - Pig RNA-seqi
Average nTPM 49.0
Pig sample Sample description nTPM
Midbrain
nTPM: 32.5
Samples: 4

Max nTPM: 50.6
Min nTPM: 14.4
Sample A Female 50.6
Sample B Female 44.7
Sample C Male 14.4
Sample D Male 20.1
Periaqueductal gray
nTPM: 49.0
Samples: 3

Max nTPM: 55.8
Min nTPM: 45.2
Sample B Female 45.9
Sample C Male 55.8
Sample D Male 45.2
Substantia nigra
nTPM: 37.1
Samples: 4

Max nTPM: 39.6
Min nTPM: 34.9
Sample A Female 35.3
Sample B Female 39.6
Sample C Male 38.6
Sample D Male 34.9
Superior colliculi
nTPM: 22.9
Samples: 4

Max nTPM: 28.1
Min nTPM: 17.9
Sample A Female 26.1
Sample B Female 17.9
Sample C Male 19.5
Sample D Male 28.1

MIDBRAIN - Mouse RNA-seqi
Average nTPM 5.7
Mouse sample Sample description nTPM
Midbrain
nTPM: 5.7
Samples: 4

Max nTPM: 7.5
Min nTPM: 2.7
Sample A Male 7.3
Sample B Male 5.1
Sample C Female 2.7
Sample D Female 7.5

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.2
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.2
68744534 Antisense, RP_050208_01_B01, Mouse strain C57BL/6J (56 days, male) 0.2

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The Human Protein Atlas

The Human Protein Atlas project is funded
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