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SLC39A11
BASAL GANGLIA - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:27.8 nTPM
HPA:27.8 nTPM
GTEx:12.1 nTPM
FANTOM5:31.2 Scaled Tags Per Million
Pig:6.8 nTPM
Mouse:21.9 nTPM
Allen mouse:0.0 Expression energy

BASAL GANGLIA - Annotated protein expression
Pending normal tissue analysis

BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 27.8
Sample id Sample description nTPM
Caudate nucleus
nTPM: 9.8
2481 Female, age 94, left hemisphere 14.4
1857 Female, age 85, left hemisphere 11.5
2288 Male, age 75, left hemisphere 11.3
2289 Male, age 61, right hemisphere 9.7
1781 Male, age 74, unknown 9.3
1854 Male, age 80, left hemisphere 7.9
2846 Female, age 79, unknown 7.2
2290 Female, age 72, unknown 6.9
Claustrum
nTPM: 13.2
2292 Female, age 85, both hemispheres 15.7
2568 Male, age 61, both hemispheres 14.8
2198 Male, age 80, both hemispheres 14.7
2645 Female, age 72, unknown 14.0
2491 Male, age 75, both hemispheres 12.8
1956 Male, age 74, unknown 12.6
2392 Female, age 94, both hemispheres 12.5
2196 Female, age 79, unknown 11.6
2284 Female, age 91, both hemispheres 10.1
Globus pallidus, externus
nTPM: 27.4
2567 Female, age 72, unknown 33.0
2646 Male, age 61, right hemisphere 31.5
1996 Male, age 80, right hemisphere 28.7
2395 Male, age 75, both hemispheres 23.3
2772 Female, age 79, unknown 20.3
Globus pallidus, internus
nTPM: 27.8
2111 Female, age 85, right hemisphere 35.9
2037 Male, age 80, right hemisphere 29.7
2778 Female, age 91, both hemispheres 28.9
2566 Female, age 72, unknown 28.7
1818 Male, age 74, unknown 24.6
2287 Male, age 75, right hemisphere 23.8
2483 Female, age 94, right hemisphere 22.7
Nucleus accumbens
nTPM: 9.9
2391 Female, age 94, left hemisphere 13.9
2732 Male, age 80, right hemisphere 13.6
1806 Female, age 85, left hemisphere 11.6
2286 Male, age 75, left hemisphere 11.3
2698 Female, age 72, unknown 8.6
1783 Male, age 74, unknown 7.7
2824 Male, age 61, right hemisphere 6.4
1856 Female, age 91, right hemisphere 6.1
Nucleus basalis of Meynert
nTPM: 14.6
2569 Male, age 61, both hemispheres 23.7
2821 Male, age 75, both hemispheres 12.8
2393 Male, age 80, right hemisphere 11.2
2484 Female, age 94, left hemisphere 10.8
Nucleus of the diagonal band
nTPM: 8.0
1812 Female, age 91, both hemispheres 11.1
2029 Male, age 61, right hemisphere 9.7
2775 Male, age 80, right hemisphere 7.3
2195 Female, age 85, both hemispheres 6.9
1979 Male, age 74, unknown 4.9
Olfactory tubercle
nTPM: 8.2
2856 Male, age 75, right hemisphere 8.6
1998 Female, age 91, both hemispheres 8.4
2487 Female, age 94, left hemisphere 8.2
1846 Male, age 80, right hemisphere 7.4
Putamen
nTPM: 12.7
2647 Male, age 75, left hemisphere 17.3
2489 Female, age 72, unknown 16.6
1829 Male, age 74, unknown 13.8
2482 Female, age 94, left hemisphere 13.4
2466 Female, age 79, unknown 11.6
1937 Female, age 91, right hemisphere 8.7
1838 Male, age 80, right hemisphere 7.1
Septal nuclei
nTPM: 9.7
2059 Female, age 85, both hemispheres 13.1
2199 Male, age 80, right hemisphere 12.0
2009 Female, age 91, both hemispheres 10.0
2394 Male, age 61, left hemisphere 9.5
2031 Female, age 72, unknown 8.9
2629 Female, age 94, right hemisphere 7.2
1960 Male, age 74, unknown 7.1

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 12.1
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 10.7
Samples: 246

Max nTPM: 29.9
Min nTPM: 3.5
Std nTPM: 4.2
Median nTPM: 9.9
GTEX-1445S-0011-R5a-SM-5PNUS 60-69 years, male 29.9
GTEX-1F52S-0011-R5a-SM-CJI22 60-69 years, female 29.0
GTEX-1GMR8-0011-R5b-SM-9QEIH 50-59 years, female 27.3
GTEX-1EH9U-0011-R5a-SM-CJI2K 60-69 years, male 24.4
GTEX-X261-0011-R5A-SM-3NMB4 50-59 years, male 22.7
GTEX-13OVJ-0011-R5a-SM-5P9H7 50-59 years, female 22.6
GTEX-12ZZX-0011-R5a-SM-5HL89 40-49 years, female 20.8
GTEX-144GO-0011-R5a-SM-5PNUR 60-69 years, male 20.5
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 19.7
GTEX-1A3MX-0011-R5a-SM-79OM5 60-69 years, male 19.7
GTEX-11H98-0011-R5b-SM-57WCF 50-59 years, male 19.1
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 6.8
Samples: 246

Max nTPM: 19.8
Min nTPM: 2.4
Std nTPM: 2.9
Median nTPM: 6.0
GTEX-1R46S-0011-R6a-SM-EZ6N6 60-69 years, female 19.8
GTEX-X261-0011-R6B-SM-4E3J8 50-59 years, male 17.9
GTEX-131XW-0011-R6b-SM-5K7XY 50-59 years, female 17.7
GTEX-1RLM8-0011-R6a-SM-EYYXS 50-59 years, male 17.5
GTEX-15EO6-0011-R6a-SM-7KULK 50-59 years, male 17.1
GTEX-1HFI6-0011-R6b-SM-CM2SR 40-49 years, male 15.1
GTEX-QVUS-0011-R6A-SM-3GACX 60-69 years, female 14.1
GTEX-1H23P-0011-R6b-SM-A9G1H 60-69 years, male 13.7
GTEX-UTHO-0011-R6A-SM-3GIJW 60-69 years, male 13.4
GTEX-11GSP-0011-R6b-SM-57WBQ 60-69 years, female 13.2
GTEX-1192X-0011-R6a-SM-DNZZB 50-59 years, male 13.2
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Brain - Putamen (basal ganglia)
Average nTPM: 12.1
Samples: 205

Max nTPM: 30.3
Min nTPM: 3.5
Std nTPM: 5.3
Median nTPM: 11.5
GTEX-1R46S-0011-R7b-SM-EXUTH 60-69 years, female 30.3
GTEX-1F52S-0011-R7b-SM-9QEH8 60-69 years, female 29.0
GTEX-1LVA9-0011-R7a-SM-EYYWG 50-59 years, male 29.0
GTEX-17HII-0011-R7a-SM-79OMS 50-59 years, male 27.4
GTEX-1GMR8-0011-R7b-SM-CJI2I 50-59 years, female 27.0
GTEX-NL3H-0011-R7a-SM-2I3G5 60-69 years, male 26.1
GTEX-13JVG-0011-R7b-SM-5MR3Q 60-69 years, male 24.1
GTEX-15EO6-0011-R7a-SM-6M46Q 50-59 years, male 24.0
GTEX-1EH9U-0011-R7a-SM-9QEGU 60-69 years, male 23.5
GTEX-1445S-0011-R7b-SM-5PNUG 60-69 years, male 23.1
GTEX-1F6I4-0011-R7a-SM-CJI24 60-69 years, male 22.8
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 31.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 15.8
FF:10164-103B2 76 years, female 15.8
Globus pallidus
Scaled Tags Per Million: 31.2
FF:10161-103A8 76 years, female 38.8
FF:10175-103C4 60 years, female 23.6
Nucleus accumbens
Scaled Tags Per Million: 15.6
FF:10037-101F1 23-56 years, mixed 15.6
Putamen
Scaled Tags Per Million: 12.8
FF:10176-103C5 60 years, female 12.8

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 6.8
Pig sample Sample description nTPM
Caudate
nTPM: 5.5
Samples: 4

Max nTPM: 6.7
Min nTPM: 4.2
Sample A Female 4.2
Sample B Female 5.6
Sample C Male 6.7
Sample D Male 5.4
Putamen
nTPM: 6.1
Samples: 4

Max nTPM: 7.1
Min nTPM: 4.9
Sample A Female 7.1
Sample B Female 4.9
Sample C Male 6.2
Sample D Male 6.0
Septum
nTPM: 6.8
Samples: 4

Max nTPM: 8.8
Min nTPM: 5.4
Sample A Female 5.4
Sample B Female 5.8
Sample C Male 8.8
Sample D Male 7.2
Ventral pallidum
nTPM: 6.2
Samples: 4

Max nTPM: 8.9
Min nTPM: 4.6
Sample A Female 4.6
Sample B Female 5.2
Sample C Male 8.9
Sample D Male 6.1

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 21.9
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 18.8
Samples: 4

Max nTPM: 20.5
Min nTPM: 17.3
Sample A Male 19.4
Sample B Male 20.5
Sample C Female 17.3
Sample D Female 17.9
Septum
nTPM: 21.9
Samples: 4

Max nTPM: 23.2
Min nTPM: 20.7
Sample A Male 22.6
Sample B Male 23.2
Sample C Female 21.2
Sample D Female 20.7
Ventral forebrain
nTPM: 16.2
Samples: 4

Max nTPM: 17.5
Min nTPM: 14.9
Sample A Male 14.9
Sample B Male 15.9
Sample C Female 17.5
Sample D Female 16.5

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 0.0
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 0.0
78633993 Antisense, RP_070703_01_A02, Mouse strain C57BL/6J (56 days, male) 0.0
Pallidum
Expression energy: 0.0
78633993 Antisense, RP_070703_01_A02, Mouse strain C57BL/6J (56 days, male) 0.0

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.