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BHLHE40
MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:47.5 nTPM
HPA:47.5 nTPM
GTEx:38.2 nTPM
FANTOM5:86.2 Scaled Tags Per Million
Pig:52.0 nTPM
Mouse:41.9 nTPM
Allen mouse:4.4 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 47.5
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 30.2
2586 Male, age 75, left hemisphere 39.5
2666 Male, age 74, left hemisphere 37.1
1827 Male, age 72, unknown 33.7
2828 Female, age 72, unknown 33.5
2019 Male, age 18, unknown 33.4
1833 Male, age 53, unknown 28.9
1830 Male, age 51, unknown 25.6
1870 Female, age 42, unknown 25.0
2411 Female, age 72, unknown 22.7
2219 Male, age 76, both hemispheres 22.5
Dorsal raphe nucleus
nTPM: 30.2
1828 Male, age 53, unknown 34.2
2750 Male, age 76, both hemispheres 30.5
2016 Female, age 72, unknown 29.4
2047 Male, age 72, unknown 28.7
2298 Female, age 72, unknown 28.1
Inferior colliculus
nTPM: 34.2
2849 Male, age 72, unknown 35.3
1848 Female, age 42, unknown 34.9
2097 Female, age 72, unknown 33.4
1890 Male, age 53, unknown 33.2
Median raphe nucleus
nTPM: 47.5
2220 Male, age 76, midline 47.5
Pedunculopontine tegmental nucleus
nTPM: 29.8
2338 Male, age 61, both hemispheres 32.5
2334 Male, age 80, both hemispheres 28.6
1921 Female, age 85, both hemispheres 28.2
Periaquaductal grey, anterior
nTPM: 33.8
1795 Male, age 51, unknown 35.8
2502 Female, age 75, unknown 35.5
1947 Male, age 18, unknown 30.2
Periaquaductal grey, dorsal
nTPM: 37.8
2850 Male, age 76, both hemispheres 51.1
1831 Male, age 72, unknown 39.1
1840 Male, age 53, unknown 32.6
2464 Female, age 72, unknown 28.2
Periaquaductal grey, lateral
nTPM: 41.5
2140 Male, age 76, both hemispheres 49.7
2272 Male, age 74, both hemispheres 38.8
2053 Male, age 18, unknown 36.1
Pretectal area
nTPM: 44.0
1816 Male, age 51, unknown 66.4
1817 Female, age 42, unknown 60.6
1944 Female, age 72, unknown 51.5
2007 Male, age 72, unknown 50.3
1815 Male, age 53, unknown 47.8
2273 Male, age 74, both hemispheres 41.7
2667 Female, age 75, unknown 40.1
2316 Male, age 76, right hemisphere 33.7
2407 Male, age 75, both hemispheres 31.4
2825 Male, age 18, unknown 30.7
2224 Female, age 72, unknown 29.4
Red nucleus
nTPM: 32.5
2785 Male, age 18, unknown 38.2
2725 Female, age 75, unknown 35.9
2823 Male, age 76, right hemisphere 35.8
1821 Female, age 72, unknown 34.2
1954 Female, age 42, unknown 32.4
2584 Male, age 75, left hemisphere 32.2
1904 Male, age 53, unknown 31.8
2588 Male, age 74, left hemisphere 31.7
1865 Male, age 51, unknown 30.8
2227 Male, age 72, unknown 29.8
2503 Female, age 72, unknown 28.6
2769 Male, age 72, unknown 28.4
Substantia nigra
nTPM: 31.4
1889 Female, age 72, unknown 40.1
1916 Female, age 42, unknown 34.6
2583 Male, age 75, right hemisphere 33.7
2665 Male, age 74, both hemispheres 33.6
2699 Male, age 18, unknown 32.6
2590 Female, age 75, unknown 31.2
1941 Male, age 53, unknown 29.6
1851 Male, age 51, unknown 28.6
2409 Female, age 72, unknown 25.9
2241 Male, age 72, unknown 24.2
Superior colliculus
nTPM: 37.0
2087 Female, age 72, unknown 45.2
2261 Male, age 18, unknown 45.2
1995 Male, age 72, unknown 41.9
1796 Male, age 53, unknown 38.8
1913 Female, age 42, unknown 37.1
2664 Male, age 75, both hemispheres 34.6
2668 Female, age 75, unknown 32.5
1839 Male, age 51, unknown 32.0
2587 Male, age 74, left hemisphere 31.8
1895 Male, age 76, right hemisphere 31.2
Ventral tegmental area
nTPM: 28.5
2218 Male, age 76, both hemispheres 36.4
2223 Female, age 72, unknown 29.5
2410 Female, age 72, unknown 26.8
1942 Male, age 51, unknown 26.7
2021 Male, age 53, unknown 26.3
1915 Female, age 42, unknown 25.3

MIDBRAIN - GTEx RNA-seqi
Average nTPM 38.2
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 38.2
Samples: 139

Max nTPM: 126.2
Min nTPM: 12.2
Std nTPM: 19.4
Median nTPM: 34.1
GTEX-1J1OQ-0011-R2b-SM-ARU88 40-49 years, female 126.2
GTEX-1GZ2Q-0011-R2b-SM-9OSWO 40-49 years, male 98.2
GTEX-1B8SG-0011-R2b-SM-79OOT 50-59 years, male 93.7
GTEX-13X6K-0011-R2b-SM-5P9K3 60-69 years, female 82.0
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 78.9
GTEX-ZDXO-0011-R2b-SM-4WKFG 60-69 years, male 78.3
GTEX-1EKGG-0011-R2a-SM-CE6R8 60-69 years, male 76.5
GTEX-145LS-0011-R2a-SM-5PNZI 60-69 years, female 76.2
GTEX-15DYW-0011-R2b-SM-7KUKY 60-69 years, female 75.7
GTEX-T5JC-0011-R2A-SM-32PLZ 20-29 years, male 72.5
GTEX-12WSD-0011-R2a-SM-5LZWB 60-69 years, female 69.1
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 86.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 86.2
FF:10158-103A5 76 years, female 86.2

MIDBRAIN - Pig RNA-seqi
Average nTPM 52.0
Pig sample Sample description nTPM
Midbrain
nTPM: 41.3
Samples: 4

Max nTPM: 54.2
Min nTPM: 19.3
Sample A Female 54.2
Sample B Female 19.3
Sample C Male 54.1
Sample D Male 37.5
Periaqueductal gray
nTPM: 23.4
Samples: 3

Max nTPM: 27.6
Min nTPM: 19.2
Sample B Female 19.2
Sample C Male 27.6
Sample D Male 23.4
Substantia nigra
nTPM: 36.5
Samples: 4

Max nTPM: 39.8
Min nTPM: 32.1
Sample A Female 37.6
Sample B Female 32.1
Sample C Male 36.6
Sample D Male 39.8
Superior colliculi
nTPM: 52.0
Samples: 4

Max nTPM: 68.7
Min nTPM: 33.2
Sample A Female 53.1
Sample B Female 33.2
Sample C Male 68.7
Sample D Male 53.1

MIDBRAIN - Mouse RNA-seqi
Average nTPM 41.9
Mouse sample Sample description nTPM
Midbrain
nTPM: 41.9
Samples: 4

Max nTPM: 45.9
Min nTPM: 36.2
Sample A Male 45.9
Sample B Male 43.8
Sample C Female 41.7
Sample D Female 36.2

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 4.4
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 4.4
356488 Antisense, RP_040617_02_F03, Mouse strain C57BL/6J (56 days, male) 4.8
76097715 Antisense, RP_060626_01_C11, Mouse strain C57BL/6J (56 days, male) 4.1

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.