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SLC38A2
BASAL GANGLIA - Expression summary
Protein expression
Caudatei
h
m
l
n
Glial cells: Low
Neuronal cells: Medium
RNA expressioni
Consensus:48.5 nTPM
HPA:48.5 nTPM
GTEx:25.3 nTPM
FANTOM5:420.9 Scaled Tags Per Million
Pig:53.9 nTPM
Mouse:61.2 nTPM
Allen mouse:6.2 Expression energy

CAUDATE - Antibody stainingi
Antibody HPA035180
Glial cells Low
Neuronal cells Medium



BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 48.5
Sample id Sample description nTPM
Caudate nucleus
nTPM: 33.6
2288 Male, age 75, left hemisphere 46.7
2481 Female, age 94, left hemisphere 43.7
2846 Female, age 79, unknown 34.8
1781 Male, age 74, unknown 31.4
2290 Female, age 72, unknown 28.5
1857 Female, age 85, left hemisphere 28.4
1854 Male, age 80, left hemisphere 27.8
2289 Male, age 61, right hemisphere 27.8
Claustrum
nTPM: 32.9
2392 Female, age 94, both hemispheres 42.6
2292 Female, age 85, both hemispheres 39.4
1956 Male, age 74, unknown 38.7
2491 Male, age 75, both hemispheres 33.9
2198 Male, age 80, both hemispheres 32.8
2196 Female, age 79, unknown 28.4
2284 Female, age 91, both hemispheres 27.3
2568 Male, age 61, both hemispheres 27.2
2645 Female, age 72, unknown 25.5
Globus pallidus, externus
nTPM: 40.2
1996 Male, age 80, right hemisphere 57.4
2772 Female, age 79, unknown 46.3
2395 Male, age 75, both hemispheres 44.8
2567 Female, age 72, unknown 27.1
2646 Male, age 61, right hemisphere 25.2
Globus pallidus, internus
nTPM: 48.5
2287 Male, age 75, right hemisphere 66.5
2111 Female, age 85, right hemisphere 55.8
2778 Female, age 91, both hemispheres 54.7
2037 Male, age 80, right hemisphere 47.6
1818 Male, age 74, unknown 45.8
2483 Female, age 94, right hemisphere 40.7
2566 Female, age 72, unknown 28.4
Nucleus accumbens
nTPM: 32.6
2391 Female, age 94, left hemisphere 48.0
2286 Male, age 75, left hemisphere 45.2
1806 Female, age 85, left hemisphere 34.7
2732 Male, age 80, right hemisphere 31.6
2698 Female, age 72, unknown 31.2
1783 Male, age 74, unknown 27.0
1856 Female, age 91, right hemisphere 22.7
2824 Male, age 61, right hemisphere 20.7
Nucleus basalis of Meynert
nTPM: 31.2
2821 Male, age 75, both hemispheres 38.8
2484 Female, age 94, left hemisphere 36.9
2393 Male, age 80, right hemisphere 27.8
2569 Male, age 61, both hemispheres 21.3
Nucleus of the diagonal band
nTPM: 27.5
1812 Female, age 91, both hemispheres 32.9
2029 Male, age 61, right hemisphere 31.3
1979 Male, age 74, unknown 25.4
2775 Male, age 80, right hemisphere 24.2
2195 Female, age 85, both hemispheres 23.4
Olfactory tubercle
nTPM: 27.6
1998 Female, age 91, both hemispheres 28.4
2487 Female, age 94, left hemisphere 27.9
2856 Male, age 75, right hemisphere 27.7
1846 Male, age 80, right hemisphere 26.6
Putamen
nTPM: 30.4
1829 Male, age 74, unknown 37.1
2482 Female, age 94, left hemisphere 36.1
2466 Female, age 79, unknown 33.1
1937 Female, age 91, right hemisphere 29.8
2489 Female, age 72, unknown 27.0
2647 Male, age 75, left hemisphere 25.4
1838 Male, age 80, right hemisphere 24.1
Septal nuclei
nTPM: 29.7
2394 Male, age 61, left hemisphere 39.4
2629 Female, age 94, right hemisphere 32.4
2031 Female, age 72, unknown 31.8
2009 Female, age 91, both hemispheres 29.4
1960 Male, age 74, unknown 26.5
2199 Male, age 80, right hemisphere 25.7
2059 Female, age 85, both hemispheres 22.8

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 25.3
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 23.3
Samples: 246

Max nTPM: 92.6
Min nTPM: 8.5
Std nTPM: 9.8
Median nTPM: 21.0
GTEX-X4XX-0011-R5A-SM-46MWN 60-69 years, male 92.6
GTEX-X585-0011-R5A-SM-46MVI 50-59 years, male 64.7
GTEX-1F52S-0011-R5a-SM-CJI22 60-69 years, female 62.6
GTEX-NL3H-0011-R5a-SM-2I3GB 60-69 years, male 59.1
GTEX-1A3MX-0011-R5a-SM-79OM5 60-69 years, male 49.6
GTEX-1HR9M-0011-R5a-SM-ARU72 60-69 years, male 46.9
GTEX-Z93S-0011-R5b-SM-4RGNI 50-59 years, male 46.8
GTEX-PVOW-0011-R5A-SM-32PL7 40-49 years, male 43.5
GTEX-1HBPH-0011-R5b-SM-A9G1R 40-49 years, female 43.0
GTEX-1CAV2-0011-R5b-SM-9QEH4 40-49 years, female 42.8
GTEX-13112-0011-R5b-SM-5DUV8 50-59 years, male 42.1
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 15.8
Samples: 246

Max nTPM: 50.3
Min nTPM: 5.9
Std nTPM: 6.7
Median nTPM: 14.1
GTEX-UTHO-0011-R6A-SM-3GIJW 60-69 years, male 50.3
GTEX-1HFI6-0011-R6b-SM-CM2SR 40-49 years, male 49.2
GTEX-1CB4J-0011-R6b-SM-9WG7B 60-69 years, male 44.1
GTEX-ZF28-0011-R6a-SM-4WKHI 60-69 years, male 39.7
GTEX-ZUA1-0011-R6b-SM-4YCDD 40-49 years, male 37.0
GTEX-X4XX-0011-R6B-SM-46MWP 60-69 years, male 36.7
GTEX-1C6WA-0011-R6a-SM-7PBYP 60-69 years, male 36.3
GTEX-X585-0011-R6A-SM-46MVJ 50-59 years, male 35.6
GTEX-NL3H-0011-R6a-SM-2I3G8 60-69 years, male 32.8
GTEX-13PDP-0011-R6b-SM-5O9D5 60-69 years, male 31.6
GTEX-YFC4-0011-R6b-SM-4V6E1 40-49 years, female 30.4
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Brain - Putamen (basal ganglia)
Average nTPM: 25.3
Samples: 205

Max nTPM: 62.1
Min nTPM: 9.9
Std nTPM: 9.4
Median nTPM: 23.8
GTEX-1F52S-0011-R7b-SM-9QEH8 60-69 years, female 62.1
GTEX-NL3H-0011-R7a-SM-2I3G5 60-69 years, male 59.4
GTEX-144GO-0011-R7b-SM-5S2TT 60-69 years, male 55.9
GTEX-1192X-0011-R7b-SM-DNZZC 50-59 years, male 53.1
GTEX-1I1CD-0011-R7a-SM-CMKHA 60-69 years, female 52.8
GTEX-1A3MX-0011-R7a-SM-7DUEM 60-69 years, male 50.1
GTEX-15G19-0011-R7b-SM-6M479 60-69 years, male 46.7
GTEX-1OJC4-0011-R7a-SM-EYYX4 50-59 years, female 45.9
GTEX-Q2AG-0011-R7A-SM-2HMJP 40-49 years, female 45.0
GTEX-1F75B-0011-R7a-SM-ARU84 50-59 years, male 44.7
GTEX-1GN2E-0011-R7b-SM-9QEIJ 60-69 years, male 43.8
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 420.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 146.3
FF:10164-103B2 76 years, female 146.3
Globus pallidus
Scaled Tags Per Million: 420.9
FF:10161-103A8 76 years, female 448.0
FF:10175-103C4 60 years, female 393.8
Nucleus accumbens
Scaled Tags Per Million: 183.0
FF:10037-101F1 23-56 years, mixed 183.0
Putamen
Scaled Tags Per Million: 83.3
FF:10176-103C5 60 years, female 83.3

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 53.9
Pig sample Sample description nTPM
Caudate
nTPM: 36.4
Samples: 4

Max nTPM: 42.4
Min nTPM: 26.3
Sample A Female 36.2
Sample B Female 26.3
Sample C Male 42.4
Sample D Male 40.8
Putamen
nTPM: 53.9
Samples: 4

Max nTPM: 89.7
Min nTPM: 37.1
Sample A Female 38.9
Sample B Female 37.1
Sample C Male 89.7
Sample D Male 49.7
Septum
nTPM: 35.2
Samples: 4

Max nTPM: 51.8
Min nTPM: 26.5
Sample A Female 30.9
Sample B Female 26.5
Sample C Male 51.8
Sample D Male 31.5
Ventral pallidum
nTPM: 37.7
Samples: 4

Max nTPM: 49.9
Min nTPM: 28.5
Sample A Female 28.5
Sample B Female 37.4
Sample C Male 49.9
Sample D Male 34.9

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 61.2
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 39.4
Samples: 4

Max nTPM: 46.9
Min nTPM: 35.4
Sample A Male 35.4
Sample B Male 38.1
Sample C Female 46.9
Sample D Female 37.0
Septum
nTPM: 49.6
Samples: 4

Max nTPM: 54.7
Min nTPM: 45.2
Sample A Male 45.2
Sample B Male 48.9
Sample C Female 54.7
Sample D Female 49.4
Ventral forebrain
nTPM: 61.2
Samples: 4

Max nTPM: 71.6
Min nTPM: 51.0
Sample A Male 51.0
Sample B Male 64.4
Sample C Female 71.6
Sample D Female 57.9

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 6.2
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 4.3
68845729 Antisense, RP_050224_02_D07, Mouse strain C57BL/6J (56 days, male) 4.3
Pallidum
Expression energy: 6.2
68845729 Antisense, RP_050224_02_D07, Mouse strain C57BL/6J (56 days, male) 6.2

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.