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MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:203.8 nTPM
HPA:203.8 nTPM
GTEx:240.8 nTPM
FANTOM5:377.6 Scaled Tags Per Million
Pig:406.4 nTPM
Mouse:448.3 nTPM
Allen mouse:1.4 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 203.8
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 192.6
2411 Female, age 72, unknown 218.3
1870 Female, age 42, unknown 209.2
1833 Male, age 53, unknown 194.9
2019 Male, age 18, unknown 194.2
1830 Male, age 51, unknown 186.9
1827 Male, age 72, unknown 186.1
2666 Male, age 74, left hemisphere 186.0
2828 Female, age 72, unknown 185.8
2219 Male, age 76, both hemispheres 183.1
2586 Male, age 75, left hemisphere 181.4
Dorsal raphe nucleus
nTPM: 188.5
2750 Male, age 76, both hemispheres 209.2
2298 Female, age 72, unknown 196.2
2047 Male, age 72, unknown 184.1
1828 Male, age 53, unknown 176.8
2016 Female, age 72, unknown 176.2
Inferior colliculus
nTPM: 179.6
2097 Female, age 72, unknown 198.9
1890 Male, age 53, unknown 179.0
1848 Female, age 42, unknown 175.3
2849 Male, age 72, unknown 165.4
Median raphe nucleus
nTPM: 192.9
2220 Male, age 76, midline 192.9
Pedunculopontine tegmental nucleus
nTPM: 191.8
2334 Male, age 80, both hemispheres 210.4
1921 Female, age 85, both hemispheres 192.2
2338 Male, age 61, both hemispheres 172.8
Periaquaductal grey, anterior
nTPM: 193.3
1947 Male, age 18, unknown 201.4
2502 Female, age 75, unknown 189.4
1795 Male, age 51, unknown 189.0
Periaquaductal grey, dorsal
nTPM: 171.0
2464 Female, age 72, unknown 176.8
1831 Male, age 72, unknown 174.8
2850 Male, age 76, both hemispheres 169.0
1840 Male, age 53, unknown 163.7
Periaquaductal grey, lateral
nTPM: 170.5
2053 Male, age 18, unknown 181.1
2272 Male, age 74, both hemispheres 175.9
2140 Male, age 76, both hemispheres 154.6
Pretectal area
nTPM: 189.2
1815 Male, age 53, unknown 212.7
2007 Male, age 72, unknown 205.7
1817 Female, age 42, unknown 202.3
1816 Male, age 51, unknown 198.0
1944 Female, age 72, unknown 191.5
2224 Female, age 72, unknown 185.5
2667 Female, age 75, unknown 183.4
2825 Male, age 18, unknown 179.9
2273 Male, age 74, both hemispheres 177.8
2316 Male, age 76, right hemisphere 172.8
2407 Male, age 75, both hemispheres 171.9
Red nucleus
nTPM: 203.8
1821 Female, age 72, unknown 226.2
1904 Male, age 53, unknown 222.8
2503 Female, age 72, unknown 218.5
1954 Female, age 42, unknown 214.8
1865 Male, age 51, unknown 207.4
2785 Male, age 18, unknown 203.5
2725 Female, age 75, unknown 199.5
2823 Male, age 76, right hemisphere 197.4
2588 Male, age 74, left hemisphere 194.4
2769 Male, age 72, unknown 194.4
2227 Male, age 72, unknown 193.1
2584 Male, age 75, left hemisphere 173.1
Substantia nigra
nTPM: 190.5
2241 Male, age 72, unknown 207.7
1889 Female, age 72, unknown 201.0
2409 Female, age 72, unknown 200.5
1851 Male, age 51, unknown 198.5
2590 Female, age 75, unknown 193.0
1941 Male, age 53, unknown 189.1
2583 Male, age 75, right hemisphere 188.7
1916 Female, age 42, unknown 188.5
2699 Male, age 18, unknown 173.6
2665 Male, age 74, both hemispheres 164.3
Superior colliculus
nTPM: 188.1
1913 Female, age 42, unknown 203.6
2587 Male, age 74, left hemisphere 198.4
2668 Female, age 75, unknown 196.7
1995 Male, age 72, unknown 193.2
2261 Male, age 18, unknown 190.5
1895 Male, age 76, right hemisphere 186.2
1839 Male, age 51, unknown 182.0
1796 Male, age 53, unknown 181.6
2087 Female, age 72, unknown 180.8
2664 Male, age 75, both hemispheres 167.5
Ventral tegmental area
nTPM: 191.2
2410 Female, age 72, unknown 211.1
1915 Female, age 42, unknown 193.2
2218 Male, age 76, both hemispheres 191.4
2223 Female, age 72, unknown 189.5
1942 Male, age 51, unknown 184.3
2021 Male, age 53, unknown 177.6

MIDBRAIN - GTEx RNA-seqi
Average nTPM 240.8
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 240.8
Samples: 139

Max nTPM: 403.5
Min nTPM: 135.1
Std nTPM: 52.5
Median nTPM: 236.5
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 403.5
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 399.1
GTEX-UTHO-0011-R2A-SM-3GIKC 60-69 years, male 397.8
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 392.9
GTEX-ZAB4-0011-R2a-SM-4RGNP 40-49 years, male 366.0
GTEX-QDT8-0011-R2A-SM-32PKQ 30-39 years, female 346.3
GTEX-1IY9M-0011-R2a-SM-D4P29 60-69 years, male 340.7
GTEX-12WSH-0011-R2a-SM-5GU68 50-59 years, male 327.0
GTEX-T5JC-0011-R2A-SM-32PLZ 20-29 years, male 325.6
GTEX-1I1GS-0011-R2b-SM-CMKHG 60-69 years, male 318.5
GTEX-1J8Q2-0011-R2b-SM-EAZ2X 60-69 years, male 313.6
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 377.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 377.6
FF:10158-103A5 76 years, female 377.6

MIDBRAIN - Pig RNA-seqi
Average nTPM 406.4
Pig sample Sample description nTPM
Midbrain
nTPM: 406.4
Samples: 4

Max nTPM: 593.2
Min nTPM: 325.8
Sample A Female 593.2
Sample B Female 380.4
Sample C Male 325.8
Sample D Male 326.1
Periaqueductal gray
nTPM: 294.6
Samples: 3

Max nTPM: 308.9
Min nTPM: 271.0
Sample B Female 308.9
Sample C Male 304.0
Sample D Male 271.0
Substantia nigra
nTPM: 388.6
Samples: 4

Max nTPM: 501.6
Min nTPM: 282.0
Sample A Female 501.6
Sample B Female 282.0
Sample C Male 407.2
Sample D Male 363.4
Superior colliculi
nTPM: 364.3
Samples: 4

Max nTPM: 432.5
Min nTPM: 261.0
Sample A Female 432.5
Sample B Female 261.0
Sample C Male 406.6
Sample D Male 357.1

MIDBRAIN - Mouse RNA-seqi
Average nTPM 448.3
Mouse sample Sample description nTPM
Midbrain
nTPM: 448.3
Samples: 4

Max nTPM: 457.3
Min nTPM: 439.7
Sample A Male 452.2
Sample B Male 439.7
Sample C Female 444.0
Sample D Female 457.3

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 1.4
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 1.4
1131 Antisense, RP_Baylor_103129, Mouse strain C57BL/6J (56 days, male) 5.5
1130 Antisense, RP_Baylor_103129, Mouse strain C57BL/6J (56 days, male) 4.7
70566163 Antisense, RP_050628_02_D11, Mouse strain C57BL/6J (56 days, male) 0.1
73931419 Antisense, RP_051214_04_E11, Mouse strain C57BL/6J (56 days, male) 0.0
1132 Sense, RPS_Baylor_37069, Mouse strain C57BL/6J (56 days, male) 0.0

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.