ABOUTMENU
HELP
NEWS
CABLES1
BASAL GANGLIA - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:67.9 nTPM
HPA:67.9 nTPM
GTEx:56.4 nTPM
FANTOM5:90.2 Scaled Tags Per Million
Pig:9.9 nTPM
Mouse:7.1 nTPM
Allen mouse:0.2 Expression energy

BASAL GANGLIA - Annotated protein expression
Pending normal tissue analysis

BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 67.9
Sample id Sample description nTPM
Caudate nucleus
nTPM: 67.9
2288 Male, age 75, left hemisphere 86.9
2289 Male, age 61, right hemisphere 83.1
2481 Female, age 94, left hemisphere 80.6
1857 Female, age 85, left hemisphere 71.0
2290 Female, age 72, unknown 65.5
1854 Male, age 80, left hemisphere 61.9
1781 Male, age 74, unknown 48.1
2846 Female, age 79, unknown 46.4
Claustrum
nTPM: 32.8
2568 Male, age 61, both hemispheres 47.1
2645 Female, age 72, unknown 43.2
2196 Female, age 79, unknown 42.3
2284 Female, age 91, both hemispheres 30.4
1956 Male, age 74, unknown 29.8
2198 Male, age 80, both hemispheres 29.8
2491 Male, age 75, both hemispheres 29.6
2392 Female, age 94, both hemispheres 23.0
2292 Female, age 85, both hemispheres 20.3
Globus pallidus, externus
nTPM: 62.5
2646 Male, age 61, right hemisphere 97.0
1996 Male, age 80, right hemisphere 74.6
2567 Female, age 72, unknown 57.2
2772 Female, age 79, unknown 50.4
2395 Male, age 75, both hemispheres 33.2
Globus pallidus, internus
nTPM: 54.6
2483 Female, age 94, right hemisphere 74.9
2037 Male, age 80, right hemisphere 69.8
1818 Male, age 74, unknown 67.6
2778 Female, age 91, both hemispheres 50.2
2287 Male, age 75, right hemisphere 46.4
2566 Female, age 72, unknown 44.9
2111 Female, age 85, right hemisphere 28.3
Nucleus accumbens
nTPM: 53.9
2286 Male, age 75, left hemisphere 68.7
2824 Male, age 61, right hemisphere 67.3
1806 Female, age 85, left hemisphere 63.8
1783 Male, age 74, unknown 57.8
1856 Female, age 91, right hemisphere 50.7
2698 Female, age 72, unknown 46.0
2391 Female, age 94, left hemisphere 38.4
2732 Male, age 80, right hemisphere 38.2
Nucleus basalis of Meynert
nTPM: 67.6
2569 Male, age 61, both hemispheres 136.6
2484 Female, age 94, left hemisphere 54.0
2393 Male, age 80, right hemisphere 42.6
2821 Male, age 75, both hemispheres 37.3
Nucleus of the diagonal band
nTPM: 43.6
1979 Male, age 74, unknown 49.8
2195 Female, age 85, both hemispheres 46.6
2029 Male, age 61, right hemisphere 46.3
2775 Male, age 80, right hemisphere 43.5
1812 Female, age 91, both hemispheres 31.7
Olfactory tubercle
nTPM: 41.4
2856 Male, age 75, right hemisphere 46.5
1998 Female, age 91, both hemispheres 43.5
1846 Male, age 80, right hemisphere 38.4
2487 Female, age 94, left hemisphere 37.1
Putamen
nTPM: 56.8
2482 Female, age 94, left hemisphere 64.8
2647 Male, age 75, left hemisphere 62.1
2489 Female, age 72, unknown 60.9
1838 Male, age 80, right hemisphere 57.4
1937 Female, age 91, right hemisphere 57.2
2466 Female, age 79, unknown 50.1
1829 Male, age 74, unknown 45.4
Septal nuclei
nTPM: 46.0
2059 Female, age 85, both hemispheres 73.7
1960 Male, age 74, unknown 56.9
2031 Female, age 72, unknown 43.6
2394 Male, age 61, left hemisphere 42.3
2199 Male, age 80, right hemisphere 37.6
2009 Female, age 91, both hemispheres 35.1
2629 Female, age 94, right hemisphere 33.0

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 56.4
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 56.4
Samples: 246

Max nTPM: 156.5
Min nTPM: 8.9
Std nTPM: 23.3
Median nTPM: 54.0
GTEX-14753-0011-R5a-SM-5S2VW 60-69 years, male 156.5
GTEX-1445S-0011-R5a-SM-5PNUS 60-69 years, male 144.5
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 118.3
GTEX-13CZV-0011-R5a-SM-5K7XA 60-69 years, male 108.5
GTEX-11UD1-0011-R5b-SM-5P9FP 40-49 years, female 105.5
GTEX-12WSM-0011-R5a-SM-5EQ4Y 60-69 years, male 104.5
GTEX-13OVJ-0011-R5a-SM-5P9H7 50-59 years, female 104.3
GTEX-13JVG-0011-R5a-SM-5MR4O 60-69 years, male 103.2
GTEX-1C6VS-0011-R5a-SM-7MXU9 60-69 years, male 102.8
GTEX-1H2FU-0011-R5b-SM-CL552 60-69 years, female 101.7
GTEX-17MF6-0011-R5a-SM-731BA 40-49 years, male 101.4
Show allShow less
Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 53.4
Samples: 246

Max nTPM: 170.1
Min nTPM: 1.9
Std nTPM: 26.0
Median nTPM: 47.2
GTEX-1RLM8-0011-R6a-SM-EYYXS 50-59 years, male 170.1
GTEX-1LB8K-0011-R6a-SM-EXURT 50-59 years, male 137.6
GTEX-131XW-0011-R6b-SM-5K7XY 50-59 years, female 136.2
GTEX-12584-0011-R6a-SM-5NQ7C 40-49 years, male 131.8
GTEX-1445S-0011-R6b-SM-5PNUF 60-69 years, male 122.9
GTEX-1IKOH-0011-R6b-SM-A9G1W 60-69 years, female 119.9
GTEX-X261-0011-R6B-SM-4E3J8 50-59 years, male 119.4
GTEX-1H3VE-0011-R6b-SM-A9G1M 40-49 years, male 119.0
GTEX-14PHW-0011-R6b-SM-5YYAR 60-69 years, female 118.6
GTEX-12ZZW-0011-R6a-SM-5DUVZ 50-59 years, male 116.7
GTEX-13JVG-0011-R6a-SM-5MR3E 60-69 years, male 115.9
Show allShow less
Brain - Putamen (basal ganglia)
Average nTPM: 55.0
Samples: 205

Max nTPM: 151.9
Min nTPM: 9.2
Std nTPM: 24.2
Median nTPM: 51.9
GTEX-1IKOH-0011-R7b-SM-CKZPH 60-69 years, female 151.9
GTEX-1R46S-0011-R7b-SM-EXUTH 60-69 years, female 137.5
GTEX-13OVL-0011-R7a-SM-5P9GW 50-59 years, male 120.5
GTEX-13CZV-0011-R7b-SM-5LZXH 60-69 years, male 117.1
GTEX-17MF6-0011-R7b-SM-7LG6J 40-49 years, male 114.9
GTEX-1LVA9-0011-R7a-SM-EYYWG 50-59 years, male 111.6
GTEX-13JVG-0011-R7b-SM-5MR3Q 60-69 years, male 98.6
GTEX-1H3VE-0011-R7b-SM-CE6S9 40-49 years, male 97.0
GTEX-17HII-0011-R7a-SM-79OMS 50-59 years, male 96.7
GTEX-ZV68-0011-R7a-SM-51MT4 50-59 years, female 96.0
GTEX-12ZZW-0011-R7a-SM-5DUWC 50-59 years, male 95.8
Show allShow less

BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 90.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 89.0
FF:10164-103B2 76 years, female 89.0
Globus pallidus
Scaled Tags Per Million: 51.4
FF:10175-103C4 60 years, female 67.0
FF:10161-103A8 76 years, female 35.7
Nucleus accumbens
Scaled Tags Per Million: 57.0
FF:10037-101F1 23-56 years, mixed 57.0
Putamen
Scaled Tags Per Million: 90.2
FF:10176-103C5 60 years, female 90.2

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 9.9
Pig sample Sample description nTPM
Caudate
nTPM: 8.8
Samples: 4

Max nTPM: 10.0
Min nTPM: 6.7
Sample A Female 6.7
Sample B Female 9.2
Sample C Male 9.1
Sample D Male 10.0
Putamen
nTPM: 9.4
Samples: 4

Max nTPM: 10.6
Min nTPM: 8.6
Sample A Female 9.2
Sample B Female 8.6
Sample C Male 10.6
Sample D Male 9.1
Septum
nTPM: 9.3
Samples: 4

Max nTPM: 10.1
Min nTPM: 8.6
Sample A Female 8.9
Sample B Female 9.5
Sample C Male 8.6
Sample D Male 10.1
Ventral pallidum
nTPM: 9.9
Samples: 4

Max nTPM: 11.6
Min nTPM: 7.6
Sample A Female 7.6
Sample B Female 11.2
Sample C Male 11.6
Sample D Male 9.3

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 7.1
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 4.2
Samples: 4

Max nTPM: 5.4
Min nTPM: 3.4
Sample A Male 3.9
Sample B Male 5.4
Sample C Female 3.9
Sample D Female 3.4
Septum
nTPM: 7.1
Samples: 4

Max nTPM: 7.9
Min nTPM: 5.5
Sample A Male 7.2
Sample B Male 5.5
Sample C Female 7.7
Sample D Female 7.9
Ventral forebrain
nTPM: 5.1
Samples: 4

Max nTPM: 6.4
Min nTPM: 4.0
Sample A Male 5.4
Sample B Male 4.0
Sample C Female 6.4
Sample D Female 4.7

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 0.2
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 0.2
71021063 Antisense, RP_050526_02_F03, Mouse strain C57BL/6J (56 days, male) 0.2
Pallidum
Expression energy: 0.1
71021063 Antisense, RP_050526_02_F03, Mouse strain C57BL/6J (56 days, male) 0.1

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.