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MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:59.0 nTPM
HPA:59.0 nTPM
GTEx:33.0 nTPM
FANTOM5:7.9 Scaled Tags Per Million
Pig:13.3 nTPM
Mouse:4.7 nTPM
Allen mouse:0.0 Expression energy

MIDBRAIN - Annotated protein expression
Pending normal tissue analysis

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 59.0
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 47.4
2586 Male, age 75, left hemisphere 86.9
2828 Female, age 72, unknown 57.3
1833 Male, age 53, unknown 48.0
2666 Male, age 74, left hemisphere 45.7
1830 Male, age 51, unknown 43.9
1870 Female, age 42, unknown 42.0
1827 Male, age 72, unknown 40.3
2411 Female, age 72, unknown 39.1
2219 Male, age 76, both hemispheres 38.8
2019 Male, age 18, unknown 32.0
Dorsal raphe nucleus
nTPM: 47.4
2047 Male, age 72, unknown 56.9
2750 Male, age 76, both hemispheres 49.0
1828 Male, age 53, unknown 46.0
2016 Female, age 72, unknown 45.1
2298 Female, age 72, unknown 39.9
Inferior colliculus
nTPM: 59.0
1890 Male, age 53, unknown 72.0
1848 Female, age 42, unknown 58.5
2849 Male, age 72, unknown 58.0
2097 Female, age 72, unknown 47.6
Median raphe nucleus
nTPM: 28.6
2220 Male, age 76, midline 28.6
Pedunculopontine tegmental nucleus
nTPM: 37.5
1921 Female, age 85, both hemispheres 55.5
2334 Male, age 80, both hemispheres 37.2
2338 Male, age 61, both hemispheres 19.7
Periaquaductal grey, anterior
nTPM: 56.0
1947 Male, age 18, unknown 64.8
2502 Female, age 75, unknown 53.5
1795 Male, age 51, unknown 49.8
Periaquaductal grey, dorsal
nTPM: 51.9
1840 Male, age 53, unknown 60.6
1831 Male, age 72, unknown 53.8
2464 Female, age 72, unknown 53.4
2850 Male, age 76, both hemispheres 39.7
Periaquaductal grey, lateral
nTPM: 48.2
2140 Male, age 76, both hemispheres 66.8
2053 Male, age 18, unknown 42.6
2272 Male, age 74, both hemispheres 35.1
Pretectal area
nTPM: 46.1
2316 Male, age 76, right hemisphere 59.7
1817 Female, age 42, unknown 53.2
2825 Male, age 18, unknown 52.8
1816 Male, age 51, unknown 52.6
2667 Female, age 75, unknown 51.3
1944 Female, age 72, unknown 47.3
2224 Female, age 72, unknown 46.1
2007 Male, age 72, unknown 44.7
1815 Male, age 53, unknown 41.4
2407 Male, age 75, both hemispheres 30.2
2273 Male, age 74, both hemispheres 27.6
Red nucleus
nTPM: 54.6
2588 Male, age 74, left hemisphere 70.0
2769 Male, age 72, unknown 66.5
2227 Male, age 72, unknown 66.3
1954 Female, age 42, unknown 62.8
1904 Male, age 53, unknown 61.4
1821 Female, age 72, unknown 58.0
2503 Female, age 72, unknown 56.7
2823 Male, age 76, right hemisphere 50.0
1865 Male, age 51, unknown 47.4
2725 Female, age 75, unknown 41.7
2785 Male, age 18, unknown 39.6
2584 Male, age 75, left hemisphere 34.2
Substantia nigra
nTPM: 56.6
1916 Female, age 42, unknown 79.8
2699 Male, age 18, unknown 65.7
2665 Male, age 74, both hemispheres 62.6
1889 Female, age 72, unknown 58.9
2590 Female, age 75, unknown 57.7
1851 Male, age 51, unknown 56.0
2241 Male, age 72, unknown 50.9
2583 Male, age 75, right hemisphere 49.7
2409 Female, age 72, unknown 49.3
1941 Male, age 53, unknown 34.9
Superior colliculus
nTPM: 45.2
2261 Male, age 18, unknown 56.8
1895 Male, age 76, right hemisphere 56.0
2664 Male, age 75, both hemispheres 54.0
2668 Female, age 75, unknown 48.4
1839 Male, age 51, unknown 47.0
2087 Female, age 72, unknown 46.8
1796 Male, age 53, unknown 46.2
2587 Male, age 74, left hemisphere 39.1
1913 Female, age 42, unknown 29.0
1995 Male, age 72, unknown 28.3
Ventral tegmental area
nTPM: 44.3
1915 Female, age 42, unknown 57.8
2410 Female, age 72, unknown 46.4
1942 Male, age 51, unknown 44.1
2218 Male, age 76, both hemispheres 42.9
2021 Male, age 53, unknown 41.4
2223 Female, age 72, unknown 33.4

MIDBRAIN - GTEx RNA-seqi
Average nTPM 33.0
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 33.0
Samples: 139

Max nTPM: 130.5
Min nTPM: 1.8
Std nTPM: 23.2
Median nTPM: 28.7
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 130.5
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 126.5
GTEX-13QJC-0011-R2b-SM-5PNUN 60-69 years, female 94.5
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 91.0
GTEX-1GZ2Q-0011-R2b-SM-9OSWO 40-49 years, male 90.1
GTEX-15EO6-0011-R2a-SM-6M46R 50-59 years, male 88.8
GTEX-14PJO-0011-R2a-SM-5ZZVF 60-69 years, male 82.1
GTEX-1H23P-0011-R2a-SM-CKZP3 60-69 years, male 73.6
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 71.3
GTEX-13CF2-0011-R2a-SM-5L3DC 60-69 years, male 66.6
GTEX-13OVJ-0011-R2b-SM-5L3GP 50-59 years, female 64.7
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 7.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 7.9
FF:10158-103A5 76 years, female 7.9

MIDBRAIN - Pig RNA-seqi
Average nTPM 13.3
Pig sample Sample description nTPM
Midbrain
nTPM: 9.3
Samples: 4

Max nTPM: 12.3
Min nTPM: 4.0
Sample A Female 4.0
Sample B Female 10.5
Sample C Male 10.2
Sample D Male 12.3
Periaqueductal gray
nTPM: 8.0
Samples: 3

Max nTPM: 9.7
Min nTPM: 7.1
Sample B Female 9.7
Sample C Male 7.3
Sample D Male 7.1
Substantia nigra
nTPM: 10.4
Samples: 4

Max nTPM: 12.8
Min nTPM: 7.6
Sample A Female 7.6
Sample B Female 12.8
Sample C Male 8.7
Sample D Male 12.4
Superior colliculi
nTPM: 13.4
Samples: 4

Max nTPM: 19.4
Min nTPM: 9.3
Sample A Female 13.4
Sample B Female 19.4
Sample C Male 9.3
Sample D Male 11.3

MIDBRAIN - Mouse RNA-seqi
Average nTPM 4.7
Mouse sample Sample description nTPM
Midbrain
nTPM: 4.7
Samples: 4

Max nTPM: 5.6
Min nTPM: 3.7
Sample A Male 5.6
Sample B Male 3.7
Sample C Female 4.2
Sample D Female 5.4

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.0
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.0
71021063 Antisense, RP_050526_02_F03, Mouse strain C57BL/6J (56 days, male) 0.0

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.