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MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:326.9 nTPM
HPA:326.9 nTPM
GTEx:164.7 nTPM
FANTOM5:610.9 Scaled Tags Per Million
Pig:55.3 nTPM
Mouse:99.2 nTPM
Allen mouse:1.5 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 326.9
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 208.0
2828 Female, age 72, unknown 260.0
2586 Male, age 75, left hemisphere 242.8
2666 Male, age 74, left hemisphere 218.7
1870 Female, age 42, unknown 216.4
1833 Male, age 53, unknown 206.6
1827 Male, age 72, unknown 202.0
2019 Male, age 18, unknown 199.4
1830 Male, age 51, unknown 196.4
2411 Female, age 72, unknown 186.0
2219 Male, age 76, both hemispheres 152.2
Dorsal raphe nucleus
nTPM: 270.2
2016 Female, age 72, unknown 328.7
2047 Male, age 72, unknown 276.5
1828 Male, age 53, unknown 276.1
2298 Female, age 72, unknown 267.2
2750 Male, age 76, both hemispheres 202.4
Inferior colliculus
nTPM: 246.5
1848 Female, age 42, unknown 264.5
1890 Male, age 53, unknown 248.0
2849 Male, age 72, unknown 247.5
2097 Female, age 72, unknown 226.1
Median raphe nucleus
nTPM: 249.0
2220 Male, age 76, midline 249.0
Pedunculopontine tegmental nucleus
nTPM: 215.8
2334 Male, age 80, both hemispheres 235.4
2338 Male, age 61, both hemispheres 213.7
1921 Female, age 85, both hemispheres 198.5
Periaquaductal grey, anterior
nTPM: 228.0
2502 Female, age 75, unknown 245.4
1795 Male, age 51, unknown 242.5
1947 Male, age 18, unknown 196.0
Periaquaductal grey, dorsal
nTPM: 318.5
2850 Male, age 76, both hemispheres 438.4
1840 Male, age 53, unknown 316.6
1831 Male, age 72, unknown 281.6
2464 Female, age 72, unknown 237.5
Periaquaductal grey, lateral
nTPM: 326.9
2140 Male, age 76, both hemispheres 399.0
2053 Male, age 18, unknown 315.3
2272 Male, age 74, both hemispheres 266.4
Pretectal area
nTPM: 237.3
2273 Male, age 74, both hemispheres 299.9
2316 Male, age 76, right hemisphere 277.4
2407 Male, age 75, both hemispheres 261.6
2224 Female, age 72, unknown 258.8
2667 Female, age 75, unknown 243.3
2825 Male, age 18, unknown 240.2
1944 Female, age 72, unknown 229.9
1817 Female, age 42, unknown 213.6
1815 Male, age 53, unknown 203.3
1816 Male, age 51, unknown 197.8
2007 Male, age 72, unknown 184.6
Red nucleus
nTPM: 204.9
1954 Female, age 42, unknown 223.9
2227 Male, age 72, unknown 223.6
2769 Male, age 72, unknown 219.6
2503 Female, age 72, unknown 217.8
1865 Male, age 51, unknown 211.4
2785 Male, age 18, unknown 207.8
1821 Female, age 72, unknown 205.9
1904 Male, age 53, unknown 202.9
2823 Male, age 76, right hemisphere 201.6
2725 Female, age 75, unknown 191.4
2588 Male, age 74, left hemisphere 178.5
2584 Male, age 75, left hemisphere 174.5
Substantia nigra
nTPM: 239.5
2699 Male, age 18, unknown 336.6
1916 Female, age 42, unknown 246.8
1851 Male, age 51, unknown 242.5
2590 Female, age 75, unknown 238.3
2665 Male, age 74, both hemispheres 236.6
2241 Male, age 72, unknown 226.6
1941 Male, age 53, unknown 218.9
1889 Female, age 72, unknown 216.7
2409 Female, age 72, unknown 216.5
2583 Male, age 75, right hemisphere 215.5
Superior colliculus
nTPM: 228.1
1995 Male, age 72, unknown 271.2
2664 Male, age 75, both hemispheres 270.3
2587 Male, age 74, left hemisphere 246.4
1913 Female, age 42, unknown 233.1
1796 Male, age 53, unknown 227.8
1839 Male, age 51, unknown 227.0
2087 Female, age 72, unknown 224.9
2668 Female, age 75, unknown 213.3
2261 Male, age 18, unknown 189.8
1895 Male, age 76, right hemisphere 177.1
Ventral tegmental area
nTPM: 241.1
2021 Male, age 53, unknown 278.9
1942 Male, age 51, unknown 261.4
1915 Female, age 42, unknown 241.2
2218 Male, age 76, both hemispheres 235.1
2223 Female, age 72, unknown 222.3
2410 Female, age 72, unknown 208.0

MIDBRAIN - GTEx RNA-seqi
Average nTPM 164.7
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 164.7
Samples: 139

Max nTPM: 553.3
Min nTPM: 58.7
Std nTPM: 100.3
Median nTPM: 133.0
GTEX-13NYS-0011-R2b-SM-5MR4G 60-69 years, male 553.3
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 548.6
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 501.2
GTEX-132Q8-0011-R2b-SM-5EQ5Z 60-69 years, male 490.1
GTEX-1F48J-0011-R2a-SM-CL535 50-59 years, female 438.4
GTEX-XMD1-0011-R2B-SM-4AT5N 60-69 years, male 372.1
GTEX-1I1GS-0011-R2b-SM-CMKHG 60-69 years, male 371.6
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 363.6
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 361.3
GTEX-1GN1U-0011-R2a-SM-CL53A 50-59 years, female 350.4
GTEX-1H23P-0011-R2a-SM-CKZP3 60-69 years, male 346.9
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 610.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 610.9
FF:10158-103A5 76 years, female 610.9

MIDBRAIN - Pig RNA-seqi
Average nTPM 55.3
Pig sample Sample description nTPM
Midbrain
nTPM: 55.4
Samples: 4

Max nTPM: 73.8
Min nTPM: 34.4
Sample A Female 34.4
Sample B Female 60.1
Sample C Male 73.8
Sample D Male 53.1
Periaqueductal gray
nTPM: 53.2
Samples: 3

Max nTPM: 62.7
Min nTPM: 47.8
Sample B Female 62.7
Sample C Male 47.8
Sample D Male 49.1
Substantia nigra
nTPM: 45.2
Samples: 4

Max nTPM: 49.8
Min nTPM: 40.8
Sample A Female 45.8
Sample B Female 40.8
Sample C Male 44.5
Sample D Male 49.8
Superior colliculi
nTPM: 54.9
Samples: 4

Max nTPM: 74.0
Min nTPM: 37.4
Sample A Female 50.2
Sample B Female 37.4
Sample C Male 74.0
Sample D Male 58.0

MIDBRAIN - Mouse RNA-seqi
Average nTPM 99.2
Mouse sample Sample description nTPM
Midbrain
nTPM: 99.2
Samples: 4

Max nTPM: 105.5
Min nTPM: 90.9
Sample A Male 99.0
Sample B Male 90.9
Sample C Female 105.5
Sample D Female 101.3

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 1.5
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 1.5
77413704 Antisense, RP_070205_01_E07, Mouse strain C57BL/6J (56 days, male) 3.1
70919167 Antisense, RP_050712_04_C11, Mouse strain C57BL/6J (56 days, male) 0.0

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