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MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:55.6 nTPM
HPA:55.6 nTPM
GTEx:57.8 nTPM
FANTOM5:30.7 Scaled Tags Per Million
Pig:34.2 nTPM
Mouse:64.6 nTPM
Allen mouse:0.4 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 55.6
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 53.7
1827 Male, age 72, unknown 55.0
1870 Female, age 42, unknown 54.7
2828 Female, age 72, unknown 54.2
2019 Male, age 18, unknown 54.0
2411 Female, age 72, unknown 53.8
1833 Male, age 53, unknown 53.7
2219 Male, age 76, both hemispheres 53.7
1830 Male, age 51, unknown 52.8
2586 Male, age 75, left hemisphere 52.8
2666 Male, age 74, left hemisphere 52.7
Dorsal raphe nucleus
nTPM: 54.2
2298 Female, age 72, unknown 56.2
2750 Male, age 76, both hemispheres 55.0
2047 Male, age 72, unknown 53.7
1828 Male, age 53, unknown 53.1
2016 Female, age 72, unknown 52.7
Inferior colliculus
nTPM: 53.6
2097 Female, age 72, unknown 54.5
1848 Female, age 42, unknown 53.9
2849 Male, age 72, unknown 53.3
1890 Male, age 53, unknown 52.9
Median raphe nucleus
nTPM: 55.6
2220 Male, age 76, midline 55.6
Pedunculopontine tegmental nucleus
nTPM: 55.1
2334 Male, age 80, both hemispheres 55.4
2338 Male, age 61, both hemispheres 55.4
1921 Female, age 85, both hemispheres 54.4
Periaquaductal grey, anterior
nTPM: 54.4
1947 Male, age 18, unknown 54.9
2502 Female, age 75, unknown 54.5
1795 Male, age 51, unknown 53.6
Periaquaductal grey, dorsal
nTPM: 53.0
2850 Male, age 76, both hemispheres 54.1
1840 Male, age 53, unknown 53.7
2464 Female, age 72, unknown 52.5
1831 Male, age 72, unknown 51.7
Periaquaductal grey, lateral
nTPM: 52.9
2140 Male, age 76, both hemispheres 53.6
2053 Male, age 18, unknown 52.9
2272 Male, age 74, both hemispheres 52.3
Pretectal area
nTPM: 54.5
1816 Male, age 51, unknown 56.7
2007 Male, age 72, unknown 56.3
1817 Female, age 42, unknown 55.8
1815 Male, age 53, unknown 55.1
1944 Female, age 72, unknown 54.9
2667 Female, age 75, unknown 54.7
2224 Female, age 72, unknown 54.2
2825 Male, age 18, unknown 53.7
2316 Male, age 76, right hemisphere 53.5
2273 Male, age 74, both hemispheres 52.5
2407 Male, age 75, both hemispheres 52.4
Red nucleus
nTPM: 54.8
2725 Female, age 75, unknown 57.3
1821 Female, age 72, unknown 57.1
1865 Male, age 51, unknown 55.7
1904 Male, age 53, unknown 55.0
1954 Female, age 42, unknown 54.9
2503 Female, age 72, unknown 54.8
2769 Male, age 72, unknown 54.8
2823 Male, age 76, right hemisphere 54.5
2227 Male, age 72, unknown 54.1
2588 Male, age 74, left hemisphere 53.9
2785 Male, age 18, unknown 53.4
2584 Male, age 75, left hemisphere 52.2
Substantia nigra
nTPM: 55.5
1916 Female, age 42, unknown 61.0
1851 Male, age 51, unknown 57.4
1889 Female, age 72, unknown 56.3
2241 Male, age 72, unknown 56.0
2699 Male, age 18, unknown 55.9
2665 Male, age 74, both hemispheres 55.0
1941 Male, age 53, unknown 54.4
2409 Female, age 72, unknown 53.9
2583 Male, age 75, right hemisphere 52.6
2590 Female, age 75, unknown 52.2
Superior colliculus
nTPM: 53.9
1796 Male, age 53, unknown 55.9
1913 Female, age 42, unknown 55.0
1895 Male, age 76, right hemisphere 54.8
2261 Male, age 18, unknown 54.6
2587 Male, age 74, left hemisphere 54.4
2087 Female, age 72, unknown 54.3
2668 Female, age 75, unknown 54.3
1995 Male, age 72, unknown 53.0
1839 Male, age 51, unknown 52.2
2664 Male, age 75, both hemispheres 50.2
Ventral tegmental area
nTPM: 55.3
1915 Female, age 42, unknown 57.0
2410 Female, age 72, unknown 57.0
2218 Male, age 76, both hemispheres 55.1
2223 Female, age 72, unknown 54.9
2021 Male, age 53, unknown 54.1
1942 Male, age 51, unknown 53.9

MIDBRAIN - GTEx RNA-seqi
Average nTPM 57.8
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 57.8
Samples: 139

Max nTPM: 124.8
Min nTPM: 33.0
Std nTPM: 16.2
Median nTPM: 54.0
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 124.8
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 110.4
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 109.7
GTEX-1MA7X-0011-R2b-SM-EZ6MT 60-69 years, male 103.3
GTEX-1IY9M-0011-R2a-SM-D4P29 60-69 years, male 98.3
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 94.0
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 91.4
GTEX-R55E-0011-R2A-SM-EYYV9 20-29 years, male 91.1
GTEX-13O3O-0011-R2b-SM-5P9H1 60-69 years, female 87.9
GTEX-1LH75-0011-R2b-SM-EYYWQ 50-59 years, female 87.0
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 86.5
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 30.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 30.7
FF:10158-103A5 76 years, female 30.7

MIDBRAIN - Pig RNA-seqi
Average nTPM 34.2
Pig sample Sample description nTPM
Midbrain
nTPM: 31.8
Samples: 4

Max nTPM: 39.0
Min nTPM: 28.1
Sample A Female 28.1
Sample B Female 29.5
Sample C Male 39.0
Sample D Male 30.7
Periaqueductal gray
nTPM: 25.2
Samples: 3

Max nTPM: 29.4
Min nTPM: 22.1
Sample B Female 24.1
Sample C Male 29.4
Sample D Male 22.1
Substantia nigra
nTPM: 30.5
Samples: 4

Max nTPM: 42.6
Min nTPM: 18.9
Sample A Female 42.6
Sample B Female 23.4
Sample C Male 37.2
Sample D Male 18.9
Superior colliculi
nTPM: 34.2
Samples: 4

Max nTPM: 46.7
Min nTPM: 22.9
Sample A Female 36.7
Sample B Female 22.9
Sample C Male 46.7
Sample D Male 30.6

MIDBRAIN - Mouse RNA-seqi
Average nTPM 64.6
Mouse sample Sample description nTPM
Midbrain
nTPM: 64.7
Samples: 4

Max nTPM: 72.2
Min nTPM: 61.3
Sample A Male 63.5
Sample B Male 61.3
Sample C Female 61.6
Sample D Female 72.2

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.4
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.4
69980370 Antisense, RP_050512_04_D09, Mouse strain C57BL/6J (56 days, male) 0.8
73521825 Antisense, RP_051101_03_B09, Mouse strain C57BL/6J (56 days, male) 0.0

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The Human Protein Atlas

The Human Protein Atlas project is funded
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