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BASAL GANGLIA - Expression summary
Protein expression
Caudatei
h
m
l
n
Glial cells: Medium
Neuronal cells: Not detected
RNA expressioni
Consensus:52.6 nTPM
HPA:52.6 nTPM
GTEx:25.7 nTPM
FANTOM5:122.7 Scaled Tags Per Million
Pig:17.7 nTPM
Mouse:102.5 nTPM
Allen mouse:0.5 Expression energy

CAUDATE - Antibody stainingi
Antibody HPA000545
Glial cells Medium
Neuronal cells Not detected



BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 52.6
Sample id Sample description nTPM
Caudate nucleus
nTPM: 38.6
1781 Male, age 74, unknown 45.5
2288 Male, age 75, left hemisphere 43.4
2481 Female, age 94, left hemisphere 43.1
2290 Female, age 72, unknown 38.7
2846 Female, age 79, unknown 35.7
1857 Female, age 85, left hemisphere 34.2
2289 Male, age 61, right hemisphere 34.2
1854 Male, age 80, left hemisphere 33.9
Claustrum
nTPM: 52.0
2198 Male, age 80, both hemispheres 57.8
2284 Female, age 91, both hemispheres 57.1
2392 Female, age 94, both hemispheres 55.2
2491 Male, age 75, both hemispheres 54.4
2568 Male, age 61, both hemispheres 53.4
2645 Female, age 72, unknown 51.4
1956 Male, age 74, unknown 50.8
2196 Female, age 79, unknown 44.4
2292 Female, age 85, both hemispheres 43.8
Globus pallidus, externus
nTPM: 34.0
2395 Male, age 75, both hemispheres 35.9
2772 Female, age 79, unknown 35.2
2646 Male, age 61, right hemisphere 33.4
2567 Female, age 72, unknown 33.1
1996 Male, age 80, right hemisphere 32.6
Globus pallidus, internus
nTPM: 35.0
2287 Male, age 75, right hemisphere 37.2
1818 Male, age 74, unknown 36.8
2483 Female, age 94, right hemisphere 36.8
2566 Female, age 72, unknown 34.0
2037 Male, age 80, right hemisphere 33.9
2111 Female, age 85, right hemisphere 33.2
2778 Female, age 91, both hemispheres 32.8
Nucleus accumbens
nTPM: 37.5
1856 Female, age 91, right hemisphere 41.6
2286 Male, age 75, left hemisphere 41.6
1783 Male, age 74, unknown 38.6
2391 Female, age 94, left hemisphere 37.4
2698 Female, age 72, unknown 36.4
2732 Male, age 80, right hemisphere 35.7
1806 Female, age 85, left hemisphere 34.4
2824 Male, age 61, right hemisphere 34.4
Nucleus basalis of Meynert
nTPM: 36.1
2484 Female, age 94, left hemisphere 38.6
2821 Male, age 75, both hemispheres 38.2
2393 Male, age 80, right hemisphere 33.9
2569 Male, age 61, both hemispheres 33.6
Nucleus of the diagonal band
nTPM: 48.6
2029 Male, age 61, right hemisphere 59.0
2775 Male, age 80, right hemisphere 48.6
1812 Female, age 91, both hemispheres 47.1
2195 Female, age 85, both hemispheres 44.2
1979 Male, age 74, unknown 44.0
Olfactory tubercle
nTPM: 52.6
1998 Female, age 91, both hemispheres 58.8
2856 Male, age 75, right hemisphere 54.4
2487 Female, age 94, left hemisphere 51.2
1846 Male, age 80, right hemisphere 46.1
Putamen
nTPM: 37.5
2482 Female, age 94, left hemisphere 40.5
2647 Male, age 75, left hemisphere 40.3
1937 Female, age 91, right hemisphere 38.4
2489 Female, age 72, unknown 37.5
2466 Female, age 79, unknown 36.2
1829 Male, age 74, unknown 35.8
1838 Male, age 80, right hemisphere 33.5
Septal nuclei
nTPM: 45.6
2031 Female, age 72, unknown 56.7
2629 Female, age 94, right hemisphere 52.1
2009 Female, age 91, both hemispheres 47.8
1960 Male, age 74, unknown 41.8
2059 Female, age 85, both hemispheres 41.6
2199 Male, age 80, right hemisphere 41.2
2394 Male, age 61, left hemisphere 37.9

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 25.7
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 25.7
Samples: 246

Max nTPM: 122.7
Min nTPM: 5.9
Std nTPM: 12.4
Median nTPM: 24.1
GTEX-RNOR-0011-R5A-SM-2TF4J 50-59 years, female 122.7
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 101.1
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 72.8
GTEX-145MG-0011-R5b-SM-5S2VU 50-59 years, male 49.6
GTEX-12ZZX-0011-R5a-SM-5HL89 40-49 years, female 49.0
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 49.0
GTEX-1IL2U-0011-R5a-SM-CE6SN 60-69 years, male 47.7
GTEX-1C6VR-0011-R5a-SM-9QEH1 60-69 years, male 47.2
GTEX-13S7M-0011-R5b-SM-5P9HS 60-69 years, female 46.4
GTEX-1HR98-0011-R5a-SM-A9G1V 60-69 years, male 45.6
GTEX-11DXW-0011-R5b-SM-DO11D 40-49 years, male 44.4
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 25.7
Samples: 246

Max nTPM: 57.6
Min nTPM: 7.1
Std nTPM: 8.6
Median nTPM: 25.8
GTEX-X4XY-0011-R6B-SM-46MVB 60-69 years, male 57.6
GTEX-1C64N-0011-R6a-SM-7IGO9 50-59 years, male 52.0
GTEX-11DZ1-0011-R6b-SM-DNZZG 50-59 years, male 45.4
GTEX-18465-0011-R6a-SM-7LG6M 50-59 years, male 44.9
GTEX-17EVQ-0011-R6a-SM-7189U 70-79 years, male 44.2
GTEX-147F4-0011-R6b-SM-5S2UP 50-59 years, male 44.0
GTEX-YJ89-0011-R6a-SM-4V6GN 60-69 years, male 43.9
GTEX-1EN7A-0011-R6b-SM-9QEHW 40-49 years, male 43.1
GTEX-1LVA9-0011-R6a-SM-EYYWH 50-59 years, male 42.6
GTEX-17HG3-0011-R6b-SM-79OK8 30-39 years, female 42.2
GTEX-T2IS-0011-R6A-SM-32QP2 20-29 years, female 41.9
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Brain - Putamen (basal ganglia)
Average nTPM: 23.4
Samples: 205

Max nTPM: 73.6
Min nTPM: 5.4
Std nTPM: 9.3
Median nTPM: 22.4
GTEX-Z93S-0011-R7b-SM-4RGNK 50-59 years, male 73.6
GTEX-1LVA9-0011-R7a-SM-EYYWG 50-59 years, male 51.8
GTEX-1F6I4-0011-R7a-SM-CJI24 60-69 years, male 45.3
GTEX-17HHY-0011-R7a-SM-718A1 50-59 years, male 42.6
GTEX-11DXW-0011-R7b-SM-DO119 40-49 years, male 42.4
GTEX-17HG3-0011-R7b-SM-7EPGR 30-39 years, female 41.3
GTEX-13FHP-0011-R7b-SM-5LZYI 50-59 years, male 41.2
GTEX-14E7W-0011-R7b-SM-5ZZV4 70-79 years, male 41.0
GTEX-1C64N-0011-R7a-SM-7IGOI 50-59 years, male 39.7
GTEX-ZVZQ-0011-R7b-SM-57WBB 60-69 years, female 39.6
GTEX-1MA7X-0011-R7b-SM-EYYWS 60-69 years, male 39.2
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 122.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 44.0
FF:10164-103B2 76 years, female 44.0
Globus pallidus
Scaled Tags Per Million: 14.6
FF:10175-103C4 60 years, female 15.7
FF:10161-103A8 76 years, female 13.5
Nucleus accumbens
Scaled Tags Per Million: 122.7
FF:10037-101F1 23-56 years, mixed 122.7
Putamen
Scaled Tags Per Million: 37.9
FF:10176-103C5 60 years, female 37.9

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 17.7
Pig sample Sample description nTPM
Caudate
nTPM: 17.8
Samples: 4

Max nTPM: 19.7
Min nTPM: 13.9
Sample A Female 19.5
Sample B Female 13.9
Sample C Male 19.7
Sample D Male 17.9
Putamen
nTPM: 16.7
Samples: 4

Max nTPM: 20.2
Min nTPM: 13.0
Sample A Female 20.2
Sample B Female 13.0
Sample C Male 19.0
Sample D Male 14.4
Septum
nTPM: 14.8
Samples: 4

Max nTPM: 16.5
Min nTPM: 11.2
Sample A Female 15.4
Sample B Female 16.5
Sample C Male 16.0
Sample D Male 11.2
Ventral pallidum
nTPM: 14.8
Samples: 4

Max nTPM: 17.7
Min nTPM: 12.6
Sample A Female 12.6
Sample B Female 17.7
Sample C Male 15.6
Sample D Male 13.1

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 102.5
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 102.5
Samples: 4

Max nTPM: 108.8
Min nTPM: 95.1
Sample A Male 100.4
Sample B Male 95.1
Sample C Female 108.8
Sample D Female 105.6
Septum
nTPM: 75.2
Samples: 4

Max nTPM: 80.7
Min nTPM: 66.8
Sample A Male 66.8
Sample B Male 78.9
Sample C Female 80.7
Sample D Female 74.4
Ventral forebrain
nTPM: 59.5
Samples: 4

Max nTPM: 63.2
Min nTPM: 56.7
Sample A Male 56.7
Sample B Male 59.1
Sample C Female 58.9
Sample D Female 63.2

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 0.5
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 0.5
72472773 Antisense, RP_051101_02_D05, Mouse strain C57BL/6J (56 days, male) 0.6
69608408 Antisense, RP_050426_04_A10, Mouse strain C57BL/6J (56 days, male) 0.3
Pallidum
Expression energy: 0.3
72472773 Antisense, RP_051101_02_D05, Mouse strain C57BL/6J (56 days, male) 0.6
69608408 Antisense, RP_050426_04_A10, Mouse strain C57BL/6J (56 days, male) 0.0

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The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.