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DMTF1
HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: Not detected
Neuronal cells: High
RNA expressioni
Consensus:16.8 nTPM
HPA:16.8 nTPM
GTEx:15.5 nTPM
FANTOM5:65.1 Scaled Tags Per Million
Pig:18.0 nTPM
Mouse:19.3 nTPM
Allen mouse:3.0 Expression energy

HIPPOCAMPUS - Antibody stainingi
Antibody HPA023846
Glial cells Not detected
Neuronal cells High


HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 16.8
Sample id Sample description nTPM
Hippocampus
nTPM: 14.5
2148 Female, age 91, left hemisphere 16.1
1911 Female, age 85, right hemisphere 15.8
2529 Female, age 94, left hemisphere 14.2
1855 Male, age 76, left hemisphere 14.0
1898 Male, age 80, left hemisphere 13.6
2621 Female, age 67, right hemisphere 13.1
Dentate gyrus
nTPM: 13.9
2010 Male, age 76, both hemispheres 15.6
1927 Female, age 91, both hemispheres 15.2
2531 Female, age 67, both hemispheres 14.9
2246 Female, age 85, both hemispheres 13.7
2528 Male, age 74, both hemispheres 13.6
2530 Female, age 94, left hemisphere 10.5
Entorhinal gyrus
nTPM: 16.4
2117 Female, age 91, right hemisphere 18.6
2686 Male, age 75, right hemisphere 17.3
1938 Female, age 85, left hemisphere 16.4
2613 Female, age 94, left hemisphere 16.4
2764 Male, age 80, right hemisphere 15.4
1787 Male, age 76, left hemisphere 14.6
Hippocampus, CA1
nTPM: 14.9
2749 Male, age 80, left hemisphere 16.2
2045 Male, age 76, both hemispheres 15.5
2082 Female, age 91, right hemisphere 15.4
1873 Female, age 85, both hemispheres 15.1
2527 Male, age 74, both hemispheres 12.4
Hippocampus, CA2
nTPM: 15.5
1963 Male, age 80, left hemisphere 16.9
2113 Female, age 91, right hemisphere 16.9
1940 Female, age 85, left hemisphere 16.5
2437 Female, age 94, left hemisphere 14.9
1892 Male, age 76, both hemispheres 13.8
2249 Male, age 74, both hemispheres 13.8
Hippocampus, CA3
nTPM: 14.5
1891 Female, age 85, both hemispheres 17.7
2137 Male, age 80, left hemisphere 16.8
2436 Male, age 74, both hemispheres 15.3
1867 Male, age 76, both hemispheres 15.0
2620 Female, age 94, left hemisphere 11.1
2861 Female, age 67, both hemispheres 11.1
Parahippocampal cortex
nTPM: 16.1
1850 Male, age 80, both hemispheres 17.8
1933 Female, age 85, both hemispheres 17.7
2622 Female, age 67, right hemisphere 17.7
2692 Male, age 74, both hemispheres 17.6
2018 Male, age 76, both hemispheres 16.7
1990 Female, age 91, right hemisphere 16.5
2532 Female, age 72, left hemisphere 16.3
2245 Female, age 91, both hemispheres 15.2
2693 Female, age 94, both hemispheres 13.9
2250 Female, age 67, right hemisphere 11.9
Perirhinal gyrus
nTPM: 15.6
2521 Female, age 94, right hemisphere 16.8
1841 Female, age 85, right hemisphere 16.4
1794 Male, age 80, right hemisphere 15.9
2848 Male, age 76, right hemisphere 15.5
1847 Female, age 91, left hemisphere 13.5
Subiculum
nTPM: 16.8
2042 Male, age 76, both hemispheres 20.2
1901 Male, age 80, both hemispheres 16.8
2619 Male, age 74, both hemispheres 16.7
2729 Female, age 91, right hemisphere 16.6
1977 Female, age 85, both hemispheres 16.1
2438 Female, age 94, left hemisphere 14.4

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 15.5
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 15.5
Samples: 197

Max nTPM: 44.9
Min nTPM: 3.0
Std nTPM: 6.3
Median nTPM: 14.6
GTEX-QMR6-0011-R1A-SM-32PKW 50-59 years, male 44.9
GTEX-18A6Q-0011-R1b-SM-731DI 60-69 years, male 43.4
GTEX-1H23P-0011-R1a-SM-ACKVC 60-69 years, male 37.1
GTEX-13NZA-0011-R1b-SM-5LUAF 60-69 years, male 32.6
GTEX-17MF6-0011-R1a-SM-72D6O 40-49 years, male 30.2
GTEX-NPJ8-0011-R1a-SM-33HCB 40-49 years, male 29.9
GTEX-16GPK-0011-R1b-SM-7EWDH 60-69 years, male 29.7
GTEX-1GN2E-0011-R1b-SM-CE6RJ 60-69 years, male 29.3
GTEX-13RTJ-0011-R1a-SM-5O9D9 60-69 years, male 27.8
GTEX-1E2YA-0011-R1b-SM-CJI29 50-59 years, male 27.5
GTEX-13QIC-0011-R1a-SM-5O9CJ 60-69 years, female 27.3
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 65.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 65.1
FF:10153-102I9 76 years, female 73.8
FF:10169-103B7 60 years, female 56.5

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 18.0
Pig sample Sample description nTPM
Dorsal hippocampus
nTPM: 18.0
Samples: 4

Max nTPM: 19.5
Min nTPM: 16.6
Sample A Female 19.5
Sample B Female 17.5
Sample C Male 18.4
Sample D Male 16.6
Entorhinal cortex
nTPM: 17.1
Samples: 4

Max nTPM: 17.6
Min nTPM: 16.6
Sample A Female 17.6
Sample B Female 17.1
Sample C Male 16.6
Sample D Male 17.0
Subiculum
nTPM: 17.8
Samples: 4

Max nTPM: 18.7
Min nTPM: 17.3
Sample A Female 18.7
Sample B Female 17.7
Sample C Male 17.3
Sample D Male 17.5
Ventral hippocampus
nTPM: 16.4
Samples: 4

Max nTPM: 18.2
Min nTPM: 14.0
Sample A Female 17.1
Sample B Female 16.4
Sample C Male 14.0
Sample D Male 18.2

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 19.3
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 18.8
Samples: 4

Max nTPM: 19.5
Min nTPM: 18.3
Sample A Male 18.3
Sample B Male 19.5
Sample C Female 18.8
Sample D Female 18.4
Hippocampal formation
nTPM: 19.3
Samples: 4

Max nTPM: 20.0
Min nTPM: 18.6
Sample A Male 20.0
Sample B Male 19.4
Sample C Female 19.3
Sample D Female 18.6

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 3.0
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 3.0
68745444 Antisense, RP_050210_02_A01, Mouse strain C57BL/6J (56 days, male) 3.0

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